Clone MIP29958 Report

Search the DGRC for MIP29958

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:299
Well:58
Vector:pOT2
Associated Gene/TranscriptCG10887-RA
Protein status:MIP29958.pep: gold
Sequenced Size:2200

Clone Sequence Records

MIP29958.complete Sequence

2200 bp assembled on 2011-04-04

GenBank Submission: BT126203.1

> MIP29958.complete
TCACTTGGCTCGGCTGTCATTACGTAAAAAACCATATAGTTTTTTTTCTG
TGCTGCTTGTGAAGAAATTGTGTTCCACTAACTCTTCGCCTTACGCTAAA
AATGGCTGACCCCAATTTGCACGACAATCAAGTAATAAAAGATGGTGAAT
CTTCCGAAAGCTGGCCTGCATTCAATAGGAGGAGCCCGAATCCCTCTTTC
TCCAGCGTTGATCAACAAGGAAATAAAACTAAGGCACGAAGGCAGCACCA
AAGCCGTTCACATTCTTTTCACTCAACAGCAAATAGTGTTCCTGAATCGC
AGGGACCTCTTGAATCTCGATCTGATCTGAACGCCAAGACATCATCGAAA
AGCGAACGACCATATATTTCCACATCCAATTCAAGCTGGACCTCTGAATC
CAGCTCCGGAAGTCCACCAGATTCAGGAGAATCGTCTTCGTTTTCGACTT
CATCTTCGCTTTCATCATCATTATTATGTGCTCCAGAACCGAAATCTATT
AACTGGAGCAACCCGAAATCTTCTTCAAATATCTCAAATGAAACCACAAC
TTCTGCGGGACAGGTTGGCGGCATTCCGAGCTTTTCAGAAAGTGATGACC
AGGGAAGTGTCGACTCTGAAACAGTCTCTAACATCAGAAAATCAACTTCC
CTCATAGAACTTAAAGACAATTTCAATACAATCATTGACGAAGATAATAA
TCAACAGCTCTCTAACGAGGGCAACATATTGTCCCCTGGGACAGTTTCTA
TTTCCAATTTTCCAAGCTCGAATGAAGTAGCAAATGGATTGATTGATGAG
ATGGAACAAGACCTACTCTCGAAGCAACATTCTACATCGACCCCAATAAA
TAAAAGTAATACAATGGAAAAAGAATTGCTCCCATTGCAATGTTCTTCAT
TTCCACCGACATCATCCGAAGGTAATATTTTAAAACCCAGGGTCAATCCT
GTGCCATTAGGTCCCAGCTCAAATACAGAGTATGAATCAAATGGAAAAAA
TTACAACATTGAAAAAAGGTTGTCCCAATTGCGATATAGTTCAGATGAAA
AGGAATCCGATGTCTTGTCGTATGCCTCTTCTGATAGTCTCGATTTAAAT
TTCGATTACGGTGATAATGCAAAGAATCAAAATGGAAATGGAATGAATGG
AGAGGTAAATGGTGATAAGGAGTCGCAAGTTCTTGATATAGAAGAACAAC
GCAAACCTTTTGAAAAAGATGTAGCAGTTAAGTTCCAGACCACCATAACA
ACCCAAAATTGTGGACTTCTAAAAGGTCCATCGCAGTTTCTGAAGATGCC
TTATTTCATACCCGTGGAATCCAAGGCATACGTGCCTGAAACCTTTCAGG
ATCGCATGACTAAGAATGATTTGAAGGACGAACAGTCACGCGAGGATTTC
ATAAATCGTCTAAAGGCAACTGTTAGGTGGCGCGAGAACGAAAACAAAAC
CAAGGAGTCCAATGCGAAAATTGTTCGTTGGTCCGATGGCAGCGAAACCT
TTCATGTGGGCAACGAGGTTTTCGATATGATGCATCACCCGGTGACCGTT
AACCAGAACCATTTGTATGTTCGCCTGGGCAGCTTCTACCAGCCTCAGGG
TTTGATCCAGAATAAGTTGACTGTGCGTCCCATGCTGGACTCCAATTTCG
GACAGAGTCATGTCCAGGCCTTGCGTAATCGAGCCACGAATAAGCCACAG
TCTGGGTGCGTTAAGGTGATAACGAACATGGGCTCCAATCCCGAGCACGA
TCATGATCGGCGCATGAAGGAGGAATTGTCCAAGCTTCGCCAGGAGGGTC
GTGAAAAGAATCGCGCGCTTATGAAGAATCATCCTCCGAAACGTGACAGG
CACTATCAAGGCTCCGATCACAATGTGGCCAAAAACGCAGGGGCATTCGA
AGAGGACGACGGTGAGGGTGCAGATTGCGAGACAAGCTCTGCATTGGAGG
TTACGAATGAACCAATGCGCAGCGAGGAAGATACCGAAGATCATATGGAC
GATGATGCTTCTTGGAGCTCACCCAATTCCCAGGAGGAAGGAAAGCAATC
GAGTTCCGAAGACGATCTCCCGATCGGAGGTGCTATCCGCAAGCCCACGC
GTTTGGTCTATTCCGGATCAGATTCCGACTAAATATTAAATAGCCGCTAG
ATACGAAATCTCAATAAACATGTCATTAGCCAGCAAAAAAAAAAAAAAAA

MIP29958.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15939115..15941121 180..2184 9970 99.9 Plus
chr3R 27901430 chr3R 15938822..15938962 1..141 690 99.3 Plus
chr3R 27901430 chr3R 15939019..15939061 140..182 215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20115131..20117136 180..2185 10030 100 Plus
3R 32079331 3R 20114838..20114978 1..141 705 100 Plus
3R 32079331 3R 20115035..20115077 140..182 215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19855962..19857967 180..2185 10030 100 Plus
3R 31820162 3R 19855669..19855809 1..141 705 100 Plus
3R 31820162 3R 19855866..19855908 140..182 215 100 Plus
Blast to na_te.dros performed 2019-03-16 22:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 393..542 781..936 125 58.9 Plus

MIP29958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:47 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15938822..15938962 1..141 99 -> Plus
chr3R 15939021..15939060 142..181 100 -> Plus
chr3R 15939117..15941121 182..2184 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:28 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2031 102..2132 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:46 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2031 102..2132 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:03 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2031 102..2132 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:28 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2031 102..2132 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:46 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2184 1..2184 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:03 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
CG10887-RA 1..2184 1..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:47 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20114838..20114978 1..141 100 -> Plus
3R 20115037..20115076 142..181 100 -> Plus
3R 20115133..20117135 182..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:47 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20114838..20114978 1..141 100 -> Plus
3R 20115037..20115076 142..181 100 -> Plus
3R 20115133..20117135 182..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:47 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20114838..20114978 1..141 100 -> Plus
3R 20115037..20115076 142..181 100 -> Plus
3R 20115133..20117135 182..2184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:46 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15940560..15940700 1..141 100 -> Plus
arm_3R 15940759..15940798 142..181 100 -> Plus
arm_3R 15940855..15942857 182..2184 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:15 Download gff for MIP29958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19855964..19857966 182..2184 100   Plus
3R 19855669..19855809 1..141 100 -> Plus
3R 19855868..19855907 142..181 100 -> Plus

MIP29958.hyp Sequence

Translation from 101 to 2131

> MIP29958.hyp
MADPNLHDNQVIKDGESSESWPAFNRRSPNPSFSSVDQQGNKTKARRQHQ
SRSHSFHSTANSVPESQGPLESRSDLNAKTSSKSERPYISTSNSSWTSES
SSGSPPDSGESSSFSTSSSLSSSLLCAPEPKSINWSNPKSSSNISNETTT
SAGQVGGIPSFSESDDQGSVDSETVSNIRKSTSLIELKDNFNTIIDEDNN
QQLSNEGNILSPGTVSISNFPSSNEVANGLIDEMEQDLLSKQHSTSTPIN
KSNTMEKELLPLQCSSFPPTSSEGNILKPRVNPVPLGPSSNTEYESNGKN
YNIEKRLSQLRYSSDEKESDVLSYASSDSLDLNFDYGDNAKNQNGNGMNG
EVNGDKESQVLDIEEQRKPFEKDVAVKFQTTITTQNCGLLKGPSQFLKMP
YFIPVESKAYVPETFQDRMTKNDLKDEQSREDFINRLKATVRWRENENKT
KESNAKIVRWSDGSETFHVGNEVFDMMHHPVTVNQNHLYVRLGSFYQPQG
LIQNKLTVRPMLDSNFGQSHVQALRNRATNKPQSGCVKVITNMGSNPEHD
HDRRMKEELSKLRQEGREKNRALMKNHPPKRDRHYQGSDHNVAKNAGAFE
EDDGEGADCETSSALEVTNEPMRSEEDTEDHMDDDASWSSPNSQEEGKQS
SSEDDLPIGGAIRKPTRLVYSGSDSD*

MIP29958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10887-PA 676 CG10887-PA 1..676 1..676 3523 100 Plus
Atu-PA 725 CG1433-PA 75..716 34..675 383 25 Plus

MIP29958.pep Sequence

Translation from 101 to 2131

> MIP29958.pep
MADPNLHDNQVIKDGESSESWPAFNRRSPNPSFSSVDQQGNKTKARRQHQ
SRSHSFHSTANSVPESQGPLESRSDLNAKTSSKSERPYISTSNSSWTSES
SSGSPPDSGESSSFSTSSSLSSSLLCAPEPKSINWSNPKSSSNISNETTT
SAGQVGGIPSFSESDDQGSVDSETVSNIRKSTSLIELKDNFNTIIDEDNN
QQLSNEGNILSPGTVSISNFPSSNEVANGLIDEMEQDLLSKQHSTSTPIN
KSNTMEKELLPLQCSSFPPTSSEGNILKPRVNPVPLGPSSNTEYESNGKN
YNIEKRLSQLRYSSDEKESDVLSYASSDSLDLNFDYGDNAKNQNGNGMNG
EVNGDKESQVLDIEEQRKPFEKDVAVKFQTTITTQNCGLLKGPSQFLKMP
YFIPVESKAYVPETFQDRMTKNDLKDEQSREDFINRLKATVRWRENENKT
KESNAKIVRWSDGSETFHVGNEVFDMMHHPVTVNQNHLYVRLGSFYQPQG
LIQNKLTVRPMLDSNFGQSHVQALRNRATNKPQSGCVKVITNMGSNPEHD
HDRRMKEELSKLRQEGREKNRALMKNHPPKRDRHYQGSDHNVAKNAGAFE
EDDGEGADCETSSALEVTNEPMRSEEDTEDHMDDDASWSSPNSQEEGKQS
SSEDDLPIGGAIRKPTRLVYSGSDSD*

MIP29958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17638-PA 481 GF17638-PA 158..481 374..676 688 45.4 Plus
Dana\GF16336-PA 694 GF16336-PA 363..568 395..604 340 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12952-PA 725 GG12952-PA 396..582 395..579 351 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22951-PA 683 GH22951-PA 353..557 395..604 342 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10887-PA 676 CG10887-PA 1..676 1..676 3523 100 Plus
Atu-PA 725 CG1433-PA 75..716 34..675 383 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22715-PA 498 GI22715-PA 184..415 357..597 372 37.3 Plus
Dmoj\GI10238-PA 677 GI10238-PA 348..530 395..575 340 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24508-PA 719 GL24508-PA 394..599 395..604 349 33.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27305-PA 719 GA27305-PA 394..599 395..604 349 33.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23097-PA 566 GM23097-PA 186..566 291..676 1535 76.5 Plus
Dsec\GM23097-PA 566 GM23097-PA 1..194 1..208 446 57.8 Plus
Dsec\GM10820-PA 726 GM10820-PA 397..582 396..579 345 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19338-PA 662 GD19338-PA 1..662 1..676 2324 71.9 Plus
Dsim\GD19799-PA 577 GD19799-PA 290..476 395..579 344 34.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23439-PA 436 GJ23439-PA 80..306 355..571 565 47.6 Plus
Dvir\GJ11042-PA 683 GJ11042-PA 353..559 395..604 342 33 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22791-PA 537 GK22791-PA 166..375 374..580 674 58.3 Plus
Dwil\GK13925-PA 653 GK13925-PA 343..547 396..604 340 32.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25650-PA 373 GE25650-PA 6..373 322..676 1163 62.8 Plus
Dyak\GE10143-PA 732 GE10143-PA 404..589 396..579 340 35.6 Plus