Clone MIP30027 Report

Search the DGRC for MIP30027

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:300
Well:27
Vector:pOT2
Associated Gene/TranscriptCG42846-RA
Protein status:MIP30027.pep: gold
Sequenced Size:590

Clone Sequence Records

MIP30027.complete Sequence

590 bp assembled on 2011-04-04

GenBank Submission: BT126205.1

> MIP30027.complete
AGAATACTTGCAAACATGGAGGCGATTTATCAATTGGTCGTAATCTTAGC
TATTATTTTTGGGCATCTGCAGTTCCAGTCCACGGTGTTAGCTGACCCTG
CTTTTCGTCGCCCAAATGCCATCGCGCCCGCCCGCACCTATAGCGGTGTA
TACAACCACTCGACGATTCACAGAGCTGTCGAAAAGTCCAATTTGACTGC
CCCGGCGGTTCACCAACCTGTCCTCCAGGCACCCGGATTTATAATACCAT
ATCAGAACCGTTCGTTGGTTCACGCCAATCAGGGATCTCATGGCGTTTTA
CCAGGTAGCGTTCCAGCGCAAGATTCAGGTCCTTCCAGCGTCTGGGTGGC
CAGTAATAATCACCAACCAGGAGTAACTGGCGTTCTTCAACCAAACCCAT
CCCAAGGTAAAATCGTAAATCCACCATTTGTCATTGGCAAAAATAATGGA
TCGTTTTATTCAACCTATAATGCAACAGTCCCTGGCAGGACTTATCCTTA
TGGAAACCTTTCCATTTGAGCAATTATAAAATTTTACCAAAACCCAATAA
ACCAAATTAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP30027.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 230926..231442 564..48 2585 100 Minus
chr3L 24539361 chr3L 231511..231559 49..1 245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 230970..231487 565..48 2590 100 Minus
3L 28110227 3L 231556..231604 49..1 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 230970..231487 565..48 2590 100 Minus
3L 28103327 3L 231556..231604 49..1 245 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:55:06 has no hits.

MIP30027.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:53 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 230926..231440 50..564 100 <- Minus
chr3L 231511..231559 1..49 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:31 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..504 16..519 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:55 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..504 16..519 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:11 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..504 16..519 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:31 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..504 16..519 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:55 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..564 1..564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:11 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG42846-RA 1..564 1..564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:53 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230971..231485 50..564 100 <- Minus
3L 231556..231604 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:53 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230971..231485 50..564 100 <- Minus
3L 231556..231604 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:53 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230971..231485 50..564 100 <- Minus
3L 231556..231604 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:55 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230971..231485 50..564 100 <- Minus
arm_3L 231556..231604 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:20 Download gff for MIP30027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230971..231485 50..564 100 <- Minus
3L 231556..231604 1..49 100   Minus

MIP30027.hyp Sequence

Translation from 0 to 518

> MIP30027.hyp
RILANMEAIYQLVVILAIIFGHLQFQSTVLADPAFRRPNAIAPARTYSGV
YNHSTIHRAVEKSNLTAPAVHQPVLQAPGFIIPYQNRSLVHANQGSHGVL
PGSVPAQDSGPSSVWVASNNHQPGVTGVLQPNPSQGKIVNPPFVIGKNNG
SFYSTYNATVPGRTYPYGNLSI*

MIP30027.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42846-PA 167 CG42846-PA 1..167 6..172 879 100 Plus

MIP30027.pep Sequence

Translation from 0 to 518

> MIP30027.pep
RILANMEAIYQLVVILAIIFGHLQFQSTVLADPAFRRPNAIAPARTYSGV
YNHSTIHRAVEKSNLTAPAVHQPVLQAPGFIIPYQNRSLVHANQGSHGVL
PGSVPAQDSGPSSVWVASNNHQPGVTGVLQPNPSQGKIVNPPFVIGKNNG
SFYSTYNATVPGRTYPYGNLSI*

MIP30027.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14676-PA 274 GG14676-PA 117..274 17..172 512 65.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42846-PA 167 CG42846-PA 1..167 6..172 879 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14292-PA 424 GM14292-PA 269..424 17..170 644 83.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13530-PA 426 GD13530-PA 269..426 17..172 651 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21037-PA 433 GE21037-PA 273..433 17..172 456 60.8 Plus