Clone MIP30038 Report

Search the DGRC for MIP30038

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:300
Well:38
Vector:pOT2
Associated Gene/TranscriptCG13040-RA
Protein status:MIP30038.pep: gold
Sequenced Size:1439

Clone Sequence Records

MIP30038.complete Sequence

1439 bp assembled on 2011-03-30

GenBank Submission: BT126200.1

> MIP30038.complete
GCAGGCCTTGCTTAACCACTTTTTAAGTAAGCCTGATAAATAAGGGGAAC
AATACTAGTTAGCTGCAACGATAATCATGTCGAATACCAGTCGTCGCGAT
ATTTGGGTGCCCAGTCCCGCCATTATACTGCATCAGATGCAATCCAACTA
GGATGTGTCCGATGAATCAACTCTGGAATACCATGAGGAATCCAACCAGG
CGTGGCGCGAACAGTATATGGCCAAAAACGTGGCCAGAATGGGAGTCGGT
TTCGAGTTCGTGAACTCAACCTCTCGCTACATGAGCTCCTTGAGCAGCAC
CCAGGATGACGATACAGAGAACCACGTGATTGGATACTCCTGCCTGTCCT
ACCGCTGCCGCATCTGAGCTCCAATGAATCCGGACTGGAGGCGCGATGCC
CTTAATTGTGGTATTTTATAGTATAAAATTAAGTTGCATTTCATCTTGTT
TTGTTTGCTATCACGAATCGAAAGACCTTCGTCTAGGCTCTCTGAACCTG
AACTAACAATATGTTTGTGGTATCAATCTTTTGGATTATTGTTCGGGCTT
TGAAAACCTTTTTCGGACCAACGACAATTGATTGTCGGTTGATTTGCAAG
TGAGGGTTCGCAGATGCTTAGTTTAGCGCCGGGTTCAAGTTCAATGTAAA
GCAAACAAGTTTTTGCCAATTGCTCGTTAGTTCGTTTTTGCTGAAGGACA
ATCTAGCTGGCGAACTTTTGGCCATATAAAGCCGTAGACATAGTTTGAAA
TCAGCATCAGTCACTCGTCGACTTCAAACCTCCTCAAACCAAATCAACAT
GTTCCGCTTCATTGCTATCTGTGCCCTGGCCACCATTGTCGCCGCTGCAC
CGGGATTCATTGAGGAGCACCCCGTGGCCGTCGCCCCAGTTGTGGCCAAA
GTAGGTGCCGTGGTGCACAGTGCCCCACTGGCCACCTCCCACCAGAGCTT
CACCCAGTACCACAACCAGGCGGTGCTCACTCCCGTGGTGAAGCATGTGG
TGCCAGCTGTTCCCGTGATTAAGACTGTGGCTCCAGTGGTTCCTGTGGTC
AAGCATGTGGCTCCCATCGTGCCCGTGGTCAAGCAAGTGGCTCCCATCGT
GCCCGTGGTCAAGCACGTGGCTCCAGTGGTTCCCGTCATCAAGACTGTGC
CCGTGGTGCACCACCAGACCTACGTCGCACCCGCTGTCCACCATGTGGCC
GCCGTGCCCGTGGTGAAGGCTCTACCCCATGCCGTCTCCCACCAGAGCCA
CACCCAGGTGCACCACCAGAAGACCATCATCACCCCGGTGGTTGCTCCTG
TGGTCAAGACTGTCGCCGTCGCCGCTGCTCCAGTGGCCCATGTCTACCAT
CATTAGGAAACCTTTTGCTTGAACGGATTGTTATGATTGCTTCTTTGAAT
AAATTTATTTGTTGATCGTAAAAAAAAAAAAAAAAAAAA

MIP30038.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16314801..16315409 1419..811 3000 99.5 Minus
chr3L 24539361 chr3L 16315475..16315953 810..332 2305 98.7 Minus
chr3L 24539361 chr3L 16316143..16316475 333..1 1650 99.7 Minus
chr3L 24539361 chr3L 16315077..16315209 1113..981 275 80.5 Minus
chr3L 24539361 chr3L 16315107..16315239 1143..1011 275 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16325078..16325691 1424..811 3055 99.8 Minus
3L 28110227 3L 16325757..16326235 810..332 2395 100 Minus
3L 28110227 3L 16326425..16326757 333..1 1650 99.7 Minus
3L 28110227 3L 16325359..16325491 1113..981 275 80.5 Minus
3L 28110227 3L 16325389..16325521 1143..1011 275 80.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16318178..16318791 1424..811 3055 99.8 Minus
3L 28103327 3L 16318857..16319335 810..332 2395 100 Minus
3L 28103327 3L 16319525..16319857 333..1 1650 99.6 Minus
Blast to na_te.dros performed on 2019-03-16 22:54:27 has no hits.

MIP30038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:32 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16314801..16315409 811..1419 99 <- Minus
chr3L 16315475..16315952 333..810 98 <- Minus
chr3L 16316144..16316475 1..332 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:23 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 1..558 799..1356 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:26 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 1..558 799..1356 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:32:42 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 1..558 799..1356 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:23 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 1..596 761..1356 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:26 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RB 1..1419 1..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:42 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
CG13040-RB 1..1419 1..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:32 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16325083..16325691 811..1419 100 <- Minus
3L 16325757..16326234 333..810 100 <- Minus
3L 16326426..16326757 1..332 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:32 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16325083..16325691 811..1419 100 <- Minus
3L 16325757..16326234 333..810 100 <- Minus
3L 16326426..16326757 1..332 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:32 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16325083..16325691 811..1419 100 <- Minus
3L 16325757..16326234 333..810 100 <- Minus
3L 16326426..16326757 1..332 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:26 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16319526..16319857 1..332 99   Minus
arm_3L 16318183..16318791 811..1419 100 <- Minus
arm_3L 16318857..16319334 333..810 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:00 Download gff for MIP30038.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16318183..16318791 811..1419 100 <- Minus
3L 16318857..16319334 333..810 100 <- Minus
3L 16319526..16319857 1..332 99   Minus

MIP30038.pep Sequence

Translation from 798 to 1355

> MIP30038.pep
MFRFIAICALATIVAAAPGFIEEHPVAVAPVVAKVGAVVHSAPLATSHQS
FTQYHNQAVLTPVVKHVVPAVPVIKTVAPVVPVVKHVAPIVPVVKQVAPI
VPVVKHVAPVVPVIKTVPVVHHQTYVAPAVHHVAAVPVVKALPHAVSHQS
HTQVHHQKTIITPVVAPVVKTVAVAAAPVAHVYHH*

MIP30038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10294-PA 199 GF10294-PA 1..199 1..185 423 66.8 Plus
Dana\GF24181-PA 136 GF24181-PA 1..69 1..76 168 56.6 Plus
Dana\GF10296-PA 136 GF10296-PA 1..56 1..57 145 56.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13466-PA 181 GG13466-PA 1..181 1..185 564 91.4 Plus
Dere\GG15985-PA 136 GG15985-PA 1..69 1..76 168 55.3 Plus
Dere\GG13467-PA 136 GG13467-PA 1..69 1..76 163 53.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15604-PA 194 GH15604-PA 28..194 1..185 374 68.3 Plus
Dgri\GH15877-PA 123 GH15877-PA 1..123 1..144 167 43.8 Plus
Dgri\GH15606-PA 114 GH15606-PA 1..69 1..76 160 53.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13040-PB 185 CG13040-PB 1..185 1..185 943 100 Plus
CG13040-PA 185 CG13040-PA 1..185 1..185 943 100 Plus
CG13060-PA 131 CG13060-PA 1..131 1..144 249 45.9 Plus
CG13041-PA 124 CG13041-PA 1..124 1..144 236 45.5 Plus
CG13059-PA 155 CG13059-PA 1..154 1..144 234 39.4 Plus
CG13044-PA 155 CG13044-PA 1..146 1..150 188 35.8 Plus
CG13043-PA 148 CG13043-PA 1..129 1..116 159 38.5 Plus
CG13042-PA 117 CG13042-PA 1..90 1..78 151 38.9 Plus
CG13063-PA 129 CG13063-PA 1..124 1..139 149 35.7 Plus
CG13042-PA 117 CG13042-PA 21..95 114..181 138 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16881-PA 174 GI16881-PA 1..174 1..185 454 73.3 Plus
Dmoj\GI12656-PA 174 GI12656-PA 1..174 1..185 454 73.3 Plus
Dmoj\GI12659-PA 111 GI12659-PA 1..69 1..76 158 52.6 Plus
Dmoj\GI16882-PA 111 GI16882-PA 1..69 1..76 158 52.6 Plus
Dmoj\GI16526-PA 111 GI16526-PA 1..69 1..76 158 53.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18007-PA 185 GL18007-PA 1..159 1..165 309 69.8 Plus
Dper\GL17851-PA 135 GL17851-PA 1..69 1..76 160 52.6 Plus
Dper\GL18008-PA 125 GL18008-PA 1..125 1..132 159 43.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11994-PA 191 GA11994-PA 1..165 1..165 297 51.7 Plus
Dpse\GA28363-PA 125 GA28363-PA 1..125 1..132 160 43.2 Plus
Dpse\GA28513-PA 135 GA28513-PA 1..69 1..76 156 51.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24415-PA 185 GM24415-PA 1..185 1..185 805 96.8 Plus
Dsec\GM25617-PA 136 GM25617-PA 1..69 1..76 165 55.3 Plus
Dsec\GM24416-PA 136 GM24416-PA 1..69 1..76 163 53.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12485-PA 185 GD12485-PA 1..185 1..185 809 98.4 Plus
Dsim\GD14622-PA 133 GD14622-PA 1..69 1..76 165 55.3 Plus
Dsim\GD12487-PA 136 GD12487-PA 1..69 1..76 163 53.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12630-PA 163 GJ12630-PA 1..163 1..185 381 68.6 Plus
Dvir\GJ12631-PA 123 GJ12631-PA 1..117 1..110 167 45 Plus
Dvir\GJ12779-PA 115 GJ12779-PA 1..108 1..128 160 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17639-PA 190 GK17639-PA 1..171 1..172 351 58 Plus
Dwil\GK16560-PA 128 GK16560-PA 1..72 1..78 172 53.8 Plus
Dwil\GK17640-PA 128 GK17640-PA 1..72 1..78 147 53.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22567-PA 185 GE22567-PA 1..185 1..185 803 96.8 Plus
Dyak\GE22563-PA 185 GE22563-PA 1..185 1..185 799 96.2 Plus
Dyak\GE19548-PA 136 GE19548-PA 1..69 1..76 166 55.3 Plus
Dyak\GE23111-PA 136 GE23111-PA 1..69 1..76 161 53.9 Plus
Dyak\GE22898-PA 140 GE22898-PA 12..73 10..76 139 55.9 Plus

MIP30038.hyp Sequence

Translation from 798 to 1355

> MIP30038.hyp
MFRFIAICALATIVAAAPGFIEEHPVAVAPVVAKVGAVVHSAPLATSHQS
FTQYHNQAVLTPVVKHVVPAVPVIKTVAPVVPVVKHVAPIVPVVKQVAPI
VPVVKHVAPVVPVIKTVPVVHHQTYVAPAVHHVAAVPVVKALPHAVSHQS
HTQVHHQKTIITPVVAPVVKTVAVAAAPVAHVYHH*

MIP30038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13040-PB 185 CG13040-PB 1..185 1..185 943 100 Plus
CG13040-PA 185 CG13040-PA 1..185 1..185 943 100 Plus
CG13060-PA 131 CG13060-PA 1..131 1..144 249 45.9 Plus
CG13041-PA 124 CG13041-PA 1..124 1..144 236 45.5 Plus
CG13059-PA 155 CG13059-PA 1..154 1..144 234 39.4 Plus