Clone MIP30042 Report

Search the DGRC for MIP30042

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:300
Well:42
Vector:pOT2
Associated Gene/TranscriptCG32141-RA
Protein status:MIP30042.pep: gold
Sequenced Size:896

Clone Sequence Records

MIP30042.complete Sequence

896 bp assembled on 2011-04-05

GenBank Submission: BT126301.1

> MIP30042.complete
ATAACATCACCGGTTGGTTATCCGTTTTAATACAACCTAAATTACAGATA
GAAACTAACAAAAAGTCAGGCCCAAAATGTGGAACTATCGTCAGAAAGTT
GATTTGGAAACATCGGTAAAGATATCGCCGTATTGCAATTCTTGGCCATC
GGCTTGTTGGTTTACTCTTAAAGGCATTGATTTGTTGAAACTTCTGGTAT
TGGAAAGATCACCAACTTACCTGGTGATTCTTACGATTGTCCTTATCGTA
CTCCTCTTACTTGTATTTAAAAGATTCAAACACAAATGGAACGATGTGCC
TATGTCGGAGATTGAGTCACTGAGAAAACGTGTTAAGTTTGTAACCAAGG
ATATGGCCATGCTGCAAGAAGCCCTAAATTCGACCGTAATACCCAAGCCG
CCGCTAGCGATTTCTGATGATATTAGGAGTAATATTAATTACTTGGATGA
ACCAGAGTCCAACGCAAATGATGACAAACTTTCAGAATTTAAAGAAATCT
TTGATCCTTTCCCCCCAGAATTCGACAAAATTAGTGAAACTAAAGCGCTA
GTACGAGAAGAAAATAAACCGGAGCCTGTGATTCCAGACGCCGAACCTCG
AGAAGATTCCGTAGTAAAAAATAGGGTGCGATTTGCTCTAACAGATCAGG
GAAAACCAGCCAAAGATGAGACCAAGCACATTAATATAGCGAAACCCACG
AAGATTATAGCTGAAAATAATGTATCCGTGGAAAATAGAAATATGCGTAA
ACGGTCATCTCCTTCAAACACGAAAACGGGATGGAAGCTCTAGATCTATT
TTCAGGAATTTTCATATTGAAATTTCATTAAAATTGTAGTGCTCGAATTT
GTAATAAACCATTCATAGTGATTTGTATAAAAAAAAAAAAAAAAAA

MIP30042.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14193856..14194438 296..878 2885 99.7 Plus
chr3L 24539361 chr3L 14193502..14193798 1..297 1470 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14203712..14204298 296..882 2935 100 Plus
3L 28110227 3L 14203358..14203654 1..297 1485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14196812..14197398 296..882 2935 100 Plus
3L 28103327 3L 14196458..14196754 1..297 1485 100 Plus
Blast to na_te.dros performed 2019-03-16 23:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 766..816 456..507 113 71.2 Plus

MIP30042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:15:56 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14193502..14193796 1..295 99 -> Plus
chr3L 14193856..14194438 296..878 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-11 16:15:23 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 1..717 77..793 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:04:57 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 1..717 77..793 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:36:30 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 1..717 77..793 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-11 16:15:23 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 1..717 77..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:04:57 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 36..913 1..878 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:36:30 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
CG32141-RA 36..913 1..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:15:56 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14203358..14203652 1..295 100 -> Plus
3L 14203712..14204294 296..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:15:56 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14203358..14203652 1..295 100 -> Plus
3L 14203712..14204294 296..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:15:56 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14203358..14203652 1..295 100 -> Plus
3L 14203712..14204294 296..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:04:57 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14196458..14196752 1..295 100 -> Plus
arm_3L 14196812..14197394 296..878 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:05:11 Download gff for MIP30042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14196458..14196752 1..295 100 -> Plus
3L 14196812..14197394 296..878 100   Plus

MIP30042.pep Sequence

Translation from 76 to 792

> MIP30042.pep
MWNYRQKVDLETSVKISPYCNSWPSACWFTLKGIDLLKLLVLERSPTYLV
ILTIVLIVLLLLVFKRFKHKWNDVPMSEIESLRKRVKFVTKDMAMLQEAL
NSTVIPKPPLAISDDIRSNINYLDEPESNANDDKLSEFKEIFDPFPPEFD
KISETKALVREENKPEPVIPDAEPREDSVVKNRVRFALTDQGKPAKDETK
HINIAKPTKIIAENNVSVENRNMRKRSSPSNTKTGWKL*

MIP30042.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15677-PA 215 GG15677-PA 1..215 1..238 581 52.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
saturn-PA 238 CG32141-PA 1..238 1..238 1234 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25458-PA 239 GM25458-PA 1..238 1..237 904 76.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14484-PA 239 GD14484-PA 1..238 1..237 817 75.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13942-PA 74 GJ13942-PA 1..71 1..70 162 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22007-PA 236 GE22007-PA 1..236 1..238 630 54.4 Plus

MIP30042.hyp Sequence

Translation from 76 to 792

> MIP30042.hyp
MWNYRQKVDLETSVKISPYCNSWPSACWFTLKGIDLLKLLVLERSPTYLV
ILTIVLIVLLLLVFKRFKHKWNDVPMSEIESLRKRVKFVTKDMAMLQEAL
NSTVIPKPPLAISDDIRSNINYLDEPESNANDDKLSEFKEIFDPFPPEFD
KISETKALVREENKPEPVIPDAEPREDSVVKNRVRFALTDQGKPAKDETK
HINIAKPTKIIAENNVSVENRNMRKRSSPSNTKTGWKL*

MIP30042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32141-PA 238 CG32141-PA 1..238 1..238 1234 100 Plus