Clone MIP30109 Report

Search the DGRC for MIP30109

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:301
Well:9
Vector:pOT2
Associated Gene/TranscriptCG14143-RA
Protein status:MIP30109.pep: gold
Sequenced Size:564

Clone Sequence Records

MIP30109.complete Sequence

564 bp assembled on 2011-04-05

GenBank Submission: BT126250.1

> MIP30109.complete
ATTGTTCAAGATGCGATCCCAGCTAACTATCTTCCTTGCCATCGCGGCTT
TCGTTTCGACTGCCTGGGCACTGACTTCTCCCGCCACGGTCACTGTTTCA
TCGGTCACTGTTTCATCGGTCACTATTCCATCGGTCACTATTCCTTCGGT
CACTATTCCGACCACTGATACAGACACGTCCACCACTTCGCCTTCGGCAA
CCGGAAGCAGCACCACCGTGACTCCCACCACCAAGAAACCAAAGAAGAAG
GCTACCGTTGTCCACTACAAGAAGAAGACCCACAAGTCGAACCGACGCCG
CAAGTTCCGCCACTCACGTGATGGAAAGAGGAAGAACCGATCGAGTTGGG
AATAAGAAGGACATCTCGTTTGGAACACCGCAGACCCTGAAGATCTACAT
GAACGACCCACACGCACCTTGTTAATCCTAATGTTACTTTACTCTTATTA
AGTTCGCAATATTTAAATAAAAACATATTTAAAATTTTTTGTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

MIP30109.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11125860..11126352 1..494 2375 99.2 Plus
chr3L 24539361 chr3L 11122762..11123195 450..9 1495 90.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11134987..11135482 1..496 2480 100 Plus
3L 28110227 3L 11131887..11132322 450..9 1445 89.6 Minus
3L 28110227 3L 11130866..11130946 7..87 180 81.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11128087..11128582 1..496 2480 100 Plus
3L 28103327 3L 11125075..11125341 368..102 1260 98.1 Minus
3L 28103327 3L 11125284..11125422 144..9 505 92 Minus
3L 28103327 3L 11124987..11125068 450..369 215 84.1 Minus
3L 28103327 3L 11123966..11124046 7..87 180 81.4 Plus
3L 28103327 3L 11124154..11124189 183..218 165 97.2 Plus
Blast to na_te.dros performed on 2019-03-16 22:56:09 has no hits.

MIP30109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:57:16 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11125860..11126313 1..455 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-07 17:26:28 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..345 11..355 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:01:25 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..345 11..355 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:34 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..345 11..355 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-07 17:26:27 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..345 11..355 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:01:25 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..494 1..494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:34 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
CG14143-RA 1..494 1..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:16 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11134987..11135480 1..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:16 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11134987..11135480 1..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:16 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11134987..11135480 1..494 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:01:25 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11128087..11128580 1..494 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:05:02 Download gff for MIP30109.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11128087..11128580 1..494 100   Plus

MIP30109.hyp Sequence

Translation from 0 to 354

> MIP30109.hyp
LFKMRSQLTIFLAIAAFVSTAWALTSPATVTVSSVTVSSVTIPSVTIPSV
TIPTTDTDTSTTSPSATGSSTTVTPTTKKPKKKATVVHYKKKTHKSNRRR
KFRHSRDGKRKNRSSWE*

MIP30109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14143-PA 114 CG14143-PA 1..114 4..117 572 100 Plus
CG32074-PA 110 CG32074-PA 1..110 4..117 501 91.3 Plus
nol-PA 130 CG32077-PA 1..123 4..113 276 53.7 Plus
CG33267-PB 94 CG33267-PB 18..91 30..107 137 37.2 Plus

MIP30109.pep Sequence

Translation from 1 to 354

> MIP30109.pep
LFKMRSQLTIFLAIAAFVSTAWALTSPATVTVSSVTVSSVTIPSVTIPSV
TIPTTDTDTSTTSPSATGSSTTVTPTTKKPKKKATVVHYKKKTHKSNRRR
KFRHSRDGKRKNRSSWE*

MIP30109.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14143-PA 114 CG14143-PA 1..114 4..117 572 100 Plus
CG32074-PA 110 CG32074-PA 1..110 4..117 501 91.3 Plus
nol-PA 130 CG32077-PA 1..123 4..113 276 53.7 Plus
CG33267-PB 94 CG33267-PB 18..91 30..107 137 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14288-PA 122 GD14288-PA 1..119 4..114 146 53.8 Plus