Clone MIP30175 Report

Search the DGRC for MIP30175

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:301
Well:75
Vector:pOT2
Associated Gene/TranscriptCG34112-RB
Protein status:MIP30175.pep: gold
Sequenced Size:988

Clone Sequence Records

MIP30175.complete Sequence

988 bp assembled on 2011-04-04

GenBank Submission: BT126207.1

> MIP30175.complete
AACCACGCGCGACGGCATTGGATTCGGACCAACTTTGGCCGACACGAACG
CACCAAAACAAAAGACATCCGAACCGGTGGAAGTGCGAGTTCGACTGTAG
CCCAGTGTTCGGTCCTATCAGCTGGAGTGTCAATATCGGAACCACCGATC
GCAAAAAAAAAAAAAAAAGAATCCGAACTAATTTGATTTGCAGTTGGTCC
TCTTCCGGGCACCATGAGCAAAGCCAAGTCAACCGCCCACGAGCCGACGA
TCCACTACCTGGACAGCGTGCTGAGCGATGAGGAGAAGCGGTGCGCCTAT
GGCCACCAGTGGCGCAACTTCTCCATCTCCCGATCCGGACGCTTTCGTTC
GAAGAACAAGAAGCGGGATGCGGTCGACGGAAAGTTCTTTGACGGAGGAT
CTGGATCAGGATCTCTGCAGGACTTCGAGAAGGTCTCAAATTGCACTTCG
AAAAGCACAATATCCAAGTGCCTCGACCCTGCGACAGGACCGATGACGCC
TGCAGCTAATCAGACAAGAAGCCAACGTGACCAGGTTGAGAGCTATAAAA
GTGTTTACGAAACGAATTTATAGATCTTTAATATGTATTTCCATTACTTA
TCATGCACATGTATATAAATTAGCATGACGCCTTTTTTATCAGATTGAGA
GGACAAAGAAAATAAAACGCATTTAGATAGTGGACTTATTGCACTACAGG
TTTCCTATGCAGAGCATATTAAGGCATATTTCTCATATGAACACTCTTTC
TGTCTATGCTTAGATCAATTGTACTTAAGTAAAATAAAAATATTAGGATT
GCTTAGATTGTTAAAGTATTAAAAAGTGATAAGTGCACTAATTACTATGC
ATATTTATAAGTTTATAGCTATATAATTGTACGTCTTACTGTATTGAAAA
TGATTACACTTAAATAAGACCAATAAAGAACCAGGTTCGATTTAAGAGTC
CTTTAATCTCTAACAGTCATAAAAAAAAAAAAAAAAAA

MIP30175.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 217430..217970 970..430 2705 100 Minus
chr3R 27901430 chr3R 219545..219978 434..1 2170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4391708..4392251 973..430 2720 100 Minus
3R 32079331 3R 4393826..4394259 434..1 2170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4132539..4133082 973..430 2720 100 Minus
3R 31820162 3R 4134657..4135090 434..1 2170 100 Minus
Blast to na_te.dros performed 2019-03-16 22:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 984..1095 558..671 115 57 Plus
TART-C 11124 TART-C TARTC 11124bp 407..465 768..828 110 68.9 Plus

MIP30175.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:55 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 217430..217967 433..970 100 <- Minus
chr3R 219547..219978 1..432 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:32 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RA 1..228 214..441 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:01:03 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 1..360 214..573 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:17 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 1..360 214..573 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:32 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1285..1685 570..970 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:01:03 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 1..970 1..970 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:17 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
CG34112-RB 1..970 1..970 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:55 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4393828..4394259 1..432 100   Minus
3R 4391711..4392248 433..970 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:55 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4393828..4394259 1..432 100   Minus
3R 4391711..4392248 433..970 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:55 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4393828..4394259 1..432 100   Minus
3R 4391711..4392248 433..970 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:01:03 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 217433..217970 433..970 100 <- Minus
arm_3R 219550..219981 1..432 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:23 Download gff for MIP30175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4132542..4133079 433..970 100 <- Minus
3R 4134659..4135090 1..432 100   Minus

MIP30175.pep Sequence

Translation from 213 to 572

> MIP30175.pep
MSKAKSTAHEPTIHYLDSVLSDEEKRCAYGHQWRNFSISRSGRFRSKNKK
RDAVDGKFFDGGSGSGSLQDFEKVSNCTSKSTISKCLDPATGPMTPAANQ
TRSQRDQVESYKSVYETNL*

MIP30175.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16813-PA 91 GF16813-PA 2..51 6..55 247 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11632-PA 90 GG11632-PA 1..71 1..73 337 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14234-PA 124 GH14234-PA 2..124 6..119 281 54.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG34112-PB 119 CG34112-PB 1..119 1..119 626 100 Plus
CG34112-PD 96 CG34112-PD 1..74 1..74 392 100 Plus
CG34112-PC 96 CG34112-PC 1..74 1..74 392 100 Plus
CG34112-PA 80 CG34112-PA 1..73 1..73 388 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22141-PA 120 GI22141-PA 1..120 1..119 326 55.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22355-PA 97 GL22355-PA 2..70 6..74 289 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27468-PA 119 GA27468-PA 2..119 6..119 363 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10706-PA 79 GM10706-PA 1..71 1..73 358 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19683-PA 79 GD19683-PA 1..71 1..73 358 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24260-PA 121 GJ24260-PA 1..121 1..119 315 54.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13760-PA 133 GK13760-PA 1..133 1..119 329 53.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25356-PA 79 GE25356-PA 1..71 1..73 333 87.7 Plus

MIP30175.hyp Sequence

Translation from 213 to 572

> MIP30175.hyp
MSKAKSTAHEPTIHYLDSVLSDEEKRCAYGHQWRNFSISRSGRFRSKNKK
RDAVDGKFFDGGSGSGSLQDFEKVSNCTSKSTISKCLDPATGPMTPAANQ
TRSQRDQVESYKSVYETNL*

MIP30175.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG34112-PB 119 CG34112-PB 1..119 1..119 626 100 Plus
CG34112-PD 96 CG34112-PD 1..74 1..74 392 100 Plus
CG34112-PC 96 CG34112-PC 1..74 1..74 392 100 Plus
CG34112-PA 80 CG34112-PA 1..73 1..73 388 100 Plus