Clone MIP30260 Report

Search the DGRC for MIP30260

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:302
Well:60
Vector:pOT2
Associated Gene/TranscriptCG13081-RA
Protein status:MIP30260.pep: gold
Sequenced Size:689

Clone Sequence Records

MIP30260.complete Sequence

689 bp assembled on 2011-04-05

GenBank Submission: BT126220.1

> MIP30260.complete
CACATCGGTCCTGCGGTCTTTTCGCTTGGGCAACATCATGTGCAAGTTCA
CCAACCGGCTGTTTGTGTTCGCCCTGCTGCTTGTGGCACTTGGAAGAATT
CTGGCCCAGCCCGTTGGCGGCAAGACTAGGCCAGGGAATTCGAGGAACGT
GATCAGCGACTTGCTGGACGTCTTATACGACGACTATTCCGAGAATGGTT
TTCAGCGCGAGGACATTCTATACGACCAACGGCAAAAGGGTGGGGAGAAC
TATCAGTTCAAAGTGGATGGGGTCGTCATCGGAATGGCGCCTCAAATGAG
CTCCAGCTTGCTCTACTCCATGGCAGAGTCCTACTTGAGTGAAATGTTGT
TGCGCCAATCTACACCGGATCCAGATTCAACTCAGATGTACGAGAGGGAT
CCTGAGACCGACACAGACTCTGGTTCCACCGAGGGCGTAACTAAGATTCC
TGAGCTAGCCCAGATTAATTTGGAAAGCAGACAACATCAAATTGTAGCTT
CTCAAACTGCCAGCCGATCTCCAACTCAACTGCTCCAATTGCTTAAGATG
CTCAAAAGTTCTAAGGCCTAAAATGATATCTTTAGATACTATGACAAGAA
ATTAGTCCTAAGTTCTTGGAAAATACATAGCAAATAAAATCATTCTTCGA
ATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP30260.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19539198..19539539 1..342 1695 99.7 Plus
chr2L 23010047 chr2L 19539591..19539768 339..516 890 100 Plus
chr2L 23010047 chr2L 19539830..19539968 516..654 695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19540656..19540997 1..342 1710 100 Plus
2L 23513712 2L 19541049..19541226 339..516 890 100 Plus
2L 23513712 2L 19541288..19541429 516..657 710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19540656..19540997 1..342 1710 100 Plus
2L 23513712 2L 19541049..19541226 339..516 890 100 Plus
2L 23513712 2L 19541288..19541429 516..657 710 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:56:14 has no hits.

MIP30260.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:57:19 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19539198..19539535 1..338 99 -> Plus
chr2L 19539591..19539768 339..516 100 -> Plus
chr2L 19539831..19539968 517..654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-07 17:26:29 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 1..534 38..571 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:01:30 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 1..534 38..571 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:39 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 1..534 38..571 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-07 17:26:29 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 1..534 38..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:01:30 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 50..703 1..654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:39 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
CG13081-RA 50..703 1..654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:19 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19541289..19541426 517..654 100   Plus
2L 19541049..19541226 339..516 100 -> Plus
2L 19540656..19540993 1..338 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:19 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19541289..19541426 517..654 100   Plus
2L 19541049..19541226 339..516 100 -> Plus
2L 19540656..19540993 1..338 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:19 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19541289..19541426 517..654 100   Plus
2L 19541049..19541226 339..516 100 -> Plus
2L 19540656..19540993 1..338 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:01:30 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19541049..19541226 339..516 100 -> Plus
arm_2L 19541289..19541426 517..654 100   Plus
arm_2L 19540656..19540993 1..338 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:11 Download gff for MIP30260.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19540656..19540993 1..338 100 -> Plus
2L 19541049..19541226 339..516 100 -> Plus
2L 19541289..19541426 517..654 100   Plus

MIP30260.hyp Sequence

Translation from 0 to 570

> MIP30260.hyp
TSVLRSFRLGNIMCKFTNRLFVFALLLVALGRILAQPVGGKTRPGNSRNV
ISDLLDVLYDDYSENGFQREDILYDQRQKGGENYQFKVDGVVIGMAPQMS
SSLLYSMAESYLSEMLLRQSTPDPDSTQMYERDPETDTDSGSTEGVTKIP
ELAQINLESRQHQIVASQTASRSPTQLLQLLKMLKSSKA*

MIP30260.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13081-PB 177 CG13081-PB 1..177 13..189 889 100 Plus
CG13081-PA 177 CG13081-PA 1..177 13..189 889 100 Plus

MIP30260.pep Sequence

Translation from 1 to 570

> MIP30260.pep
TSVLRSFRLGNIMCKFTNRLFVFALLLVALGRILAQPVGGKTRPGNSRNV
ISDLLDVLYDDYSENGFQREDILYDQRQKGGENYQFKVDGVVIGMAPQMS
SSLLYSMAESYLSEMLLRQSTPDPDSTQMYERDPETDTDSGSTEGVTKIP
ELAQINLESRQHQIVASQTASRSPTQLLQLLKMLKSSKA*

MIP30260.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14247-PA 177 GF14247-PA 1..163 13..175 568 60.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21194-PA 177 GG21194-PA 1..177 13..189 798 91 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13081-PB 177 CG13081-PB 1..177 13..189 889 100 Plus
CG13081-PA 177 CG13081-PA 1..177 13..189 889 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17659-PA 101 GI17659-PA 1..91 13..111 217 46.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26087-PA 178 GL26087-PA 1..177 13..188 510 62.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12031-PA 178 GA12031-PA 1..177 13..188 510 62.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17363-PA 216 GM17363-PA 28..216 1..189 972 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24221-PA 177 GD24221-PA 1..177 13..189 898 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18226-PA 167 GJ18226-PA 1..166 13..188 285 36.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24380-PA 149 GK24380-PA 1..146 34..172 200 37.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13268-PA 177 GE13268-PA 1..177 13..189 803 91 Plus