Clone MIP30310 Report

Search the DGRC for MIP30310

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:303
Well:10
Vector:pOTB7
Associated Gene/Transcriptlbe-RA
Protein status:MIP30310.pep: gold
Sequenced Size:2224

Clone Sequence Records

MIP30310.complete Sequence

2224 bp assembled on 2011-04-20

GenBank Submission: BT126373.1

> MIP30310.complete
GAGAGAGCGAGCGAACGAGAGCTGCGGCAGAGAGCAGCGGCAGCAAAAGA
ACTGAAGAAATATCGACGTGTCTAGTTAGCAAACCAATCTTCAATCTAGT
TTCGAACAGTTGACTGCGAAGCGTCGAGTTGAGAGGTCCTACGCCATTGG
ATCAGCGTCGTCGTGTCGAAGCATCAGTGTAAACTAATCAAACAAATCAG
AGGAAATATAGCAAGATTCGAGTGTACAAGGCTTGCCAGTATCGTCAGTA
CCGACTTGCAGTGTAGTGACAAAGCCGTCTTGAAAAACAGTTAAGTGCTA
AACCAAACGAATTGAAACGAAACTCTCGGAAAAGAAACCAAGTGCTGAAG
CGAACCTAAATGCTCTGCCCTCCAACCATGCGTCCGGCCAGTCCCGCCGA
ATCCGAAATCTCCGTGGGCGGAGCCCCCAGCCCGCTGCCCACGCAGCATC
ATACGCATCCGCACTCGCATCCTCATCCGCTGCAGCATCCGCGGGCCAGC
ACCATTGATCTGCTGCAGCAGCAGCAGCTGCTGATGCAGCACCATGCCGC
AGCAGCCGCCGCAGCAGCTGCAGCCGCCTCCGGACTCACCCGGAGTGCCG
TCGGCAATTTGCCGGAGGACTACTTCCATCCGCTGAAGCGCCTGCGCATG
TCCTCGTCCTCCTCGGAGCCACGAGACCACACGCCCAGTCCGCCGTCAGC
AGTTCCGGAGCCCCAGACCAACCAGACTACCAAGTCGGCCATCGAGGGGG
TTAAGAGCTTCTCCATCGCGGACATACTGGGTCACTCGGAGAAGCAGCGC
GAGGAGTCCGTTTCCCCGCCCCCAAATGCAAACCTCCTGGCTCCACCTGC
CTCCCGGCCCATTGCCCCCTCGGGCGGATTACTGCAGCCACGCACGGAAC
CGTTGGATGTCCACCCGGCCGCTGCTGCTGCCATGCTCCTGCCAAGCGGA
CAGATTGTTCGGCCGTGGGATCACCTCCTGGGGCCGACCATGCCCGTCCG
CCCCTTCATCCCCTCCGCCCTGCTGCACTACGAGCAGCGCCTGGCCCTGG
ACTACCATCGCCAGTTGCAGGAACACTTTAACGCCCAGGCCCAGCTCCTT
CGCCACATGGGCATGAATCCCGCGATCATCGCTTCCGAGGACGGCAGCTC
GGAGCGTTCCCAGCGATCGAGCAGCAGCAATGGCAGCACCGAATGCTGCA
GCCCACGGCAGGCGGAAAAACTTGAAAAACTAACCACCCAAGAGGGAAGT
GAGGAAGCTCAGAAGAAGAAATCAGAGGAGCAGCCAACGGGTTCAGGAAA
GTCAAACGGAGACACTCCTCTGGATGCTCTCTTCCAGATGACCACAAAGG
ACTTTGACGAGTCGCAAGATAAATCCCACTTGGACATCTTCTCGAACAGG
CCGCAGCCGAAGAAGAAGCGCAAGTCGCGCACCGCCTTCACCAACCACCA
GATCTTTGAGCTGGAGAAGCGGTTCCTCTACCAGAAGTACCTGTCGCCAG
CGGACCGCGATGAGATCGCCGCCTCACTGGGACTGTCCAACGCCCAGGTG
ATCACCTGGTTCCAGAACCGGCGAGCCAAGCAGAAGCGGGACATCGAGGA
GCTGAAGAAGGACTTCGATAGCGTCAAGGTCTTCTCCGCCCACAAGTCCT
TCCTGGAGAACGTGAACGACCTAAGCATCCTCAAGAAGAAGCCCATGCAT
GAGTCGGACATGGTGGGCCTGGCCGCTGCGGCAGCCGCTGCCGGAATGGT
GGTTCCCGTGCCTGGATCCGTGCCAATGGGAGGCGCTCCGCCCAAATGAG
GGCGTGGCCAGGTGCGCACCGAACCGCCAAGGCAACCTGATGATTGGTAC
AGAAAGTGAGCAACGAGGAGTCGAGTATTTTGTTTAATTTTGAGCTGAGT
GCCGGGAAAGTTGGGACGCATCTTTTCGCCCAATTCATTTTCACCAGGCA
TTCGACGGCCAAAGGAAGATCCAGGACATCCTTAACATCTTCCATGGCCA
CGACGCAGAGGGCAAGGGCAACATTCAATGCCAAGCCCCGATGGAGACTA
ACCAGCCAGGACCAAGGCCCCTTTGTGGGCCGTGTAATCAAGCCAGAACA
ATCATAGCCGGAAACGGAAGTGGATATGGAACCAGCCAGAACTTGGATTC
GGCTCTACAGCCAGGATCACATCGATTATAATCGGCTCTTTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

MIP30310.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17268926..17270297 1372..1 6830 99.9 Minus
chr3R 27901430 chr3R 17265428..17266253 2192..1367 4130 100 Minus
chr3R 27901430 chr3R 17257123..17257452 1360..1028 580 79 Minus
chr3R 27901430 chr3R 17234895..17235036 1551..1410 410 85.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21445081..21446452 1372..1 6710 99.3 Minus
3R 32079331 3R 21441575..21442402 2194..1367 4035 99.2 Minus
3R 32079331 3R 21433273..21433602 1360..1028 565 78.7 Minus
3R 32079331 3R 21411070..21411211 1551..1410 410 85.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21185912..21187283 1372..1 6710 99.2 Minus
3R 31820162 3R 21182406..21183233 2194..1367 4035 99.1 Minus
3R 31820162 3R 21174231..21174433 1230..1028 535 84.2 Minus
3R 31820162 3R 21151901..21152042 1551..1410 410 85.9 Minus
3R 31820162 3R 21151551..21151619 1613..1545 180 84 Minus
3R 31820162 3R 21174104..21174156 1360..1308 145 84.9 Minus
Blast to na_te.dros performed on 2019-03-15 10:34:22 has no hits.

MIP30310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:35:26 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17265428..17266251 1369..2192 100 <- Minus
chr3R 17268930..17269723 575..1368 100 == Minus
chr3R 17269784..17270276 22..514 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:36 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 1..1440 360..1799 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:19:50 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 1..1440 360..1799 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:06:23 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 1..1440 360..1799 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:36 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 1..2045 133..2177 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:19:50 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 86..2277 1..2192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:23 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
lbe-RA 86..2277 1..2192 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:26 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21441577..21442400 1369..2192 99 <- Minus
3R 21445085..21446452 1..1368 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:26 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21441577..21442400 1369..2192 99 <- Minus
3R 21445085..21446452 1..1368 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:26 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21441577..21442400 1369..2192 99 <- Minus
3R 21445085..21446452 1..1368 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:19:50 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17267299..17268122 1369..2192 99 <- Minus
arm_3R 17270807..17272174 1..1368 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:10 Download gff for MIP30310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21182408..21183231 1369..2192 99 <- Minus
3R 21185916..21187283 1..1368 99   Minus

MIP30310.pep Sequence

Translation from 359 to 1798

> MIP30310.pep
MLCPPTMRPASPAESEISVGGAPSPLPTQHHTHPHSHPHPLQHPRASTID
LLQQQQLLMQHHAAAAAAAAAAASGLTRSAVGNLPEDYFHPLKRLRMSSS
SSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREES
VSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIV
RPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHM
GMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEA
QKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQP
KKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITW
FQNRRAKQKRDIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESD
MVGLAAAAAAAGMVVPVPGSVPMGGAPPK*

MIP30310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16415-PA 472 GF16415-PA 1..472 1..479 1656 81.1 Plus
Dana\GF16416-PA 365 GF16416-PA 26..351 90..449 804 55.1 Plus
Dana\B-H1-PA 943 GF22335-PA 712..771 351..410 193 61.7 Plus
Dana\GF18604-PA 341 GF18604-PA 211..280 344..414 188 53.5 Plus
Dana\GF21379-PA 313 GF21379-PA 175..253 351..419 182 49.4 Plus
Dana\B-H1-PA 943 GF22335-PA 371..424 351..404 175 63 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14495-PA 479 GG14495-PA 1..479 1..479 2497 98.7 Plus
Dere\GG14506-PA 370 GG14506-PA 42..346 121..449 861 61.8 Plus
Dere\GG19114-PA 650 GG19114-PA 383..442 351..410 195 63.3 Plus
Dere\GG19116-PA 551 GG19116-PA 302..361 351..410 193 61.7 Plus
Dere\GG24664-PA 339 GG24664-PA 209..278 344..414 188 53.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18718-PA 538 GH18718-PA 360..491 319..450 702 99.2 Plus
Dgri\GH18729-PA 411 GH18729-PA 65..341 127..422 633 57.3 Plus
Dgri\GH24902-PA 648 GH24902-PA 373..432 351..410 195 63.3 Plus
Dgri\GH24903-PA 571 GH24903-PA 308..367 351..410 193 61.7 Plus
Dgri\GH22054-PA 350 GH22054-PA 220..289 344..414 188 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
lbe-PA 479 CG6545-PA 1..479 1..479 2483 100 Plus
lbl-PA 372 CG6570-PA 7..346 98..449 896 57.3 Plus
lbl-PC 410 CG6570-PC 7..322 98..424 833 57.1 Plus
lbl-PB 294 CG6570-PB 7..276 98..371 497 45.9 Plus
B-H2-PA 645 CG5488-PA 3..437 6..410 195 24.6 Plus
B-H2-PB 303 CG5488-PB 36..95 351..410 182 63.3 Plus
B-H1-PA 544 CG5529-PA 297..356 351..410 182 61.7 Plus
Hmx-PE 592 CG43748-PE 96..527 18..412 182 23.5 Plus
Hmx-PC 592 CG43748-PC 96..527 18..412 182 23.5 Plus
Hmx-PD 718 CG43748-PD 96..527 18..412 182 23.5 Plus
C15-PA 339 CG7937-PA 92..278 249..414 180 33.2 Plus
NK7.1-PD 721 CG8524-PD 289..450 269..410 180 31.5 Plus
NK7.1-PC 721 CG8524-PC 289..450 269..410 180 31.5 Plus
NK7.1-PB 721 CG8524-PB 289..450 269..410 180 31.5 Plus
NK7.1-PA 721 CG8524-PA 289..450 269..410 180 31.5 Plus
CG11085-PA 295 CG11085-PA 158..267 351..461 177 41.7 Plus
unpg-PA 485 CG1650-PA 110..376 159..410 176 25.6 Plus
vnd-PB 577 CG6172-PB 311..456 262..410 175 31.5 Plus
vnd-PA 723 CG6172-PA 457..602 262..410 175 31.5 Plus
bap-PA 382 CG7902-PA 174..232 352..410 170 55.9 Plus
hbn-PA 409 CG33152-PA 76..218 270..418 169 31.4 Plus
bsh-PC 429 CG10604-PC 273..333 352..412 169 54.1 Plus
bsh-PB 429 CG10604-PB 273..333 352..412 169 54.1 Plus
tin-PA 416 CG7895-PA 247..358 285..410 168 36.5 Plus
Dr-PA 515 CG1897-PA 414..488 346..416 165 49.3 Plus
pb-PC 777 CG31481-PC 188..261 348..421 165 50 Plus
pb-PA 782 CG31481-PA 193..266 348..421 165 50 Plus
pb-PD 772 CG31481-PD 180..256 345..421 164 48.1 Plus
pb-PB 777 CG31481-PB 194..261 354..421 163 52.9 Plus
exex-PA 525 CG8254-PA 438..496 352..410 161 57.6 Plus
Dfd-PA 586 CG2189-PA 359..424 345..411 161 53.7 Plus
lab-PB 213 CG1264-PB 89..146 357..414 155 55.2 Plus
ind-PB 320 CG11551-PB 27..284 177..410 154 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10818-PA 511 GI10818-PA 1..511 1..479 1413 70.1 Plus
Dmoj\GI10819-PA 411 GI10819-PA 80..350 131..423 647 53.1 Plus
Dmoj\GI15964-PA 524 GI15964-PA 279..338 351..410 194 61.7 Plus
Dmoj\GI15962-PA 636 GI15962-PA 376..435 351..410 194 63.3 Plus
Dmoj\GI16386-PA 185 GI16386-PA 46..124 351..419 182 49.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24419-PA 468 GL24419-PA 1..468 1..479 1558 77.5 Plus
Dper\GL24421-PA 442 GL24421-PA 53..341 116..423 674 55.9 Plus
Dper\GL19887-PA 633 GL19887-PA 370..429 351..410 196 63.3 Plus
Dper\GL19888-PA 550 GL19888-PA 294..353 351..410 193 61.7 Plus
Dper\GL23122-PA 349 GL23122-PA 219..288 344..414 187 53.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19675-PA 468 GA19675-PA 1..468 1..479 1534 76.8 Plus
Dpse\GA19692-PB 402 GA19692-PB 53..364 116..446 762 57.4 Plus
Dpse\GA28280-PA 636 GA28280-PA 373..432 351..410 195 63.3 Plus
Dpse\GA28287-PA 626 GA28287-PA 370..429 351..410 193 61.7 Plus
Dpse\GA21136-PA 761 GA21136-PA 393..506 342..462 192 39.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11006-PA 479 GM11006-PA 1..479 1..479 2517 99.6 Plus
Dsec\GM11007-PA 412 GM11007-PA 42..322 121..424 776 61.6 Plus
Dsec\GM13506-PA 640 GM13506-PA 373..432 351..410 195 63.3 Plus
Dsec\GM13509-PA 461 GM13509-PA 214..273 351..410 194 61.7 Plus
Dsec\GM10429-PA 339 GM10429-PA 209..278 344..414 187 53.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19976-PA 479 GD19976-PA 1..479 1..479 2526 100 Plus
Dsim\GD19977-PA 412 GD19977-PA 42..322 121..424 776 61.2 Plus
Dsim\GD15666-PA 638 GD15666-PA 371..430 351..410 195 63.3 Plus
Dsim\GD15668-PA 547 GD15668-PA 300..359 351..410 194 61.7 Plus
Dsim\GD19430-PA 339 GD19430-PA 209..278 344..414 188 53.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14417-PA 516 GJ14417-PA 1..483 1..451 1438 71.4 Plus
Dvir\GJ14418-PA 355 GJ14418-PA 59..312 127..422 682 55.7 Plus
Dvir\GJ18853-PA 701 GJ18853-PA 410..505 312..410 195 45 Plus
Dvir\GJ18855-PA 547 GJ18855-PA 279..338 351..410 194 61.7 Plus
Dvir\GJ14312-PA 338 GJ14312-PA 208..277 344..414 187 53.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11027-PA 463 GK11027-PA 1..463 1..479 1563 77.3 Plus
Dwil\GK11029-PA 424 GK11029-PA 47..333 113..423 720 57 Plus
Dwil\GK19953-PA 650 GK19953-PA 395..454 351..410 193 61.7 Plus
Dwil\GK12060-PA 361 GK12060-PA 231..300 344..414 187 53.5 Plus
Dwil\GK25513-PA 254 GK25513-PA 116..194 351..419 184 49.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24975-PA 473 GE24975-PA 1..473 7..479 2448 98.1 Plus
Dyak\GE24976-PA 405 GE24976-PA 42..322 121..424 770 61 Plus
Dyak\GE11064-PA 236 GE11064-PA 42..234 121..336 400 53 Plus
Dyak\GE24977-PA 244 GE24977-PA 78..161 341..424 374 82.1 Plus
Dyak\GE17661-PA 656 GE17661-PA 380..439 351..410 195 63.3 Plus

MIP30310.hyp Sequence

Translation from 359 to 1798

> MIP30310.hyp
MLCPPTMRPASPAESEISVGGAPSPLPTQHHTHPHSHPHPLQHPRASTID
LLQQQQLLMQHHAAAAAAAAAAASGLTRSAVGNLPEDYFHPLKRLRMSSS
SSEPRDHTPSPPSAVPEPQTNQTTKSAIEGVKSFSIADILGHSEKQREES
VSPPPNANLLAPPASRPIAPSGGLLQPRTEPLDVHPAAAAAMLLPSGQIV
RPWDHLLGPTMPVRPFIPSALLHYEQRLALDYHRQLQEHFNAQAQLLRHM
GMNPAIIASEDGSSERSQRSSSSNGSTECCSPRQAEKLEKLTTQEGSEEA
QKKKSEEQPTGSGKSNGDTPLDALFQMTTKDFDESQDKSHLDIFSNRPQP
KKKRKSRTAFTNHQIFELEKRFLYQKYLSPADRDEIAASLGLSNAQVITW
FQNRRAKQKRDIEELKKDFDSVKVFSAHKSFLENVNDLSILKKKPMHESD
MVGLAAAAAAAGMVVPVPGSVPMGGAPPK*

MIP30310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
lbe-PA 479 CG6545-PA 1..479 1..479 2483 100 Plus
lbl-PA 372 CG6570-PA 7..346 98..449 896 57.3 Plus
lbl-PC 410 CG6570-PC 7..322 98..424 833 57.1 Plus
lbl-PB 294 CG6570-PB 7..276 98..371 497 45.9 Plus
B-H2-PA 645 CG5488-PA 3..437 6..410 195 24.6 Plus