Clone MIP30325 Report

Search the DGRC for MIP30325

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:303
Well:25
Vector:pOTB7
Associated Gene/TranscriptCG42790-RB
Protein status:MIP30325.pep: gold
Sequenced Size:1418

Clone Sequence Records

MIP30325.complete Sequence

1418 bp assembled on 2011-04-05

GenBank Submission: BT126348.1

> MIP30325.complete
CTGTAGTGTATGCAGCAAGGCAGGAGACCAGGAACCCAGGAAGCAAACTC
CCTGGATGTTGCATGTTCCTGCCGCCAGCAAGGAAATGAAAACGCCCCCA
TGTGTGAGCCAAAAAGCCAACGACCTGGGCAGGGCAGGCACAAACTACAA
AGCGGGGGAAAAAAAAATAAACACACCGGAGTCGGAGGAGTCCTGCCGCA
GAGCAACTATAAAAAGGACACCCTGCAACCGTGTGTACCGGAGTCTCTAT
CGGTGTCAGCCAGCAGCTTACAAAGTCAGACGCATTTGTGTGTGTATCTG
TGTGTGCCGAACGAAGGACGCTCCCAGCTTTTAAGTATAATTTTCCAGAT
ACACAGGCCGAGCACTGGAGTCCAGGTGGCAACTGCTAGACAAAAACGAT
GTGCACGCCCCCACAAAAAACACACACACACACAGAGACAAGAACGTACA
GGAGCAGAAGGACCAGAAGGACCAGCCAGCTAAACGAGTAGGTGGAGAAA
ATTTAATATGATTATGTTGAAGTAAATTGCTTGAAACAAATGTTGCATGG
GCATCCGCCCAGCGATCTCCACCTGTGCATGTGCATATGTACATACATAC
ATATACACACCCATCTATTTGGCAGCCAGACTTTGATTCACTCAGTTGGC
AGACCTTTAAAAAGCAATTAAGGACAATACGATTTGCTCCTCAAAGGCTA
CAAGCTGTCAACGAGTTGAGAATGATGGTGGGTAAGTTCTGCCCTTATTG
TGTGGCCAATAAAATACTATATGGGCTGCAGTGATTTGCAAACAATATAA
ATAAATTATGTTAGAGCTAACAACAATTGATACTGTTTGGTATGTAATGT
ATTTTTTACATTTTCATTAACAGACGCAAGAAGTTTAACGAGCCAAAATC
ATTAGACTAATTATTGCCGCCTCATTAGCGAGCTATCAAATAATGATATG
CCATTATTGCTGTCATCCCGTTGGTTGGTCATCAGAATGTGTATCTCTAA
TACTAATTAAAATTATCAAATGATGTGCACACGAATCCACAGAAAAAGCG
CAGGCAGAGCGAACGTAGTTGGCATGTCTGCAATGTGGCATGCCGCCGTT
GGCAAATCAATTGACATGCCGCGATGCCAATCGTCAACAGCCCTCAGTCC
ATGATAATTAAATTGCACATTGCATTTTATTGCAATTCAATTAAAATATA
AAATATTTTTCAATTGGTTCACTGAAGCGGTTAGCCGTCGTTCGACTCCG
AGCCACGTAATTAAATTAATCAACGATGCTTTCACTCATTGCCACCATTG
CTGCCAACGTCTATCTGCTACCAACATGTGAAACAATTCGGTGGTAATAC
GTATATACATATTTCCCATGAAAAATAAATAGCACAAAAAAAGGGTTCAA
AAAAAAAAAAAAAAAAAA

MIP30325.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22607472..22608869 1..1398 6990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26784356..26785756 1..1401 7005 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26525187..26526587 1..1401 7005 100 Plus
Blast to na_te.dros performed 2019-03-16 22:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 596..623 583..610 113 89.3 Plus

MIP30325.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:57:28 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22607472..22608869 1..1398 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-07 17:26:37 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RA 114..402 1..289 100 == Plus
CG42790-RA 403..537 349..483 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:01:54 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RB 1..474 10..483 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:34:00 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RB 1..474 10..483 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-07 17:26:36 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RA 114..402 1..289 100 == Plus
CG42790-RA 403..537 349..483 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:01:54 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RB 19..1416 1..1398 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:00 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
CG42790-RB 19..1416 1..1398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:28 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26784356..26785753 1..1398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:28 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26784356..26785753 1..1398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:57:28 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26784356..26785753 1..1398 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:01:54 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22610078..22611475 1..1398 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:05:18 Download gff for MIP30325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26525187..26526584 1..1398 100   Plus

MIP30325.pep Sequence

Translation from 9 to 482

> MIP30325.pep
MQQGRRPGTQEANSLDVACSCRQQGNENAPMCEPKSQRPGQGRHKLQSGG
KKNKHTGVGGVLPQSNYKKDTLQPCVPESLSVSASSLQSQTHLCVYLCVP
NEGRSQLLSIIFQIHRPSTGVQVATARQKRCARPHKKHTHTQRQERTGAE
GPEGPAS*
Sequence MIP30325.pep has no blast hits.

MIP30325.hyp Sequence

Translation from 9 to 482

> MIP30325.hyp
MQQGRRPGTQEANSLDVACSCRQQGNENAPMCEPKSQRPGQGRHKLQSGG
KKNKHTGVGGVLPQSNYKKDTLQPCVPESLSVSASSLQSQTHLCVYLCVP
NEGRSQLLSIIFQIHRPSTGVQVATARQKRCARPHKKHTHTQRQERTGAE
GPEGPAS*

MIP30325.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG42790-PB 157 CG42790-PB 1..157 1..157 840 100 Plus
CG42790-PC 106 CG42790-PC 1..93 1..93 496 100 Plus