Clone MIP30541 Report

Search the DGRC for MIP30541

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:305
Well:41
Vector:pOT2
Associated Gene/TranscriptCG40298-RA
Protein status:MIP30541.pep: gold
Sequenced Size:1184

Clone Sequence Records

MIP30541.complete Sequence

1184 bp assembled on 2011-06-10

GenBank Submission: BT128741.1

> MIP30541.complete
TATAACGCAGCCTTAGACGAATCAATTTTTTTGTTGTAATGAATTGGCGT
AGTTTTATTGTTACTTTAATAAACTGCATAGTCTGGTCAATACAAGTTAT
TCAATTAAATGGTACTGGAATTAAAAACCTAGGAAGAACAAGAGACTCTT
TTAGAGCGGTACAAGTACCCCAACAGTTTTATGATGCTATCGAACAGTCA
GATTTCAGTAAACATAGTTTACAAAATAAGTTAGAGCATTTCCTTGAAAA
ACTTCAAAAAAACTTGACCATATCGGCAGTATTGAGTGACTCCGAAGATA
TTGTCACAAGTGAAAGAAACTATGTTTACAAGATGCGAGAACTATCAACC
TTCTTTTATGAAGCTTCTTTTTCTTTCGAACAATTTTCTTCTGATATCCA
AACTTTTTATGAAACATCAAAAAATGCAAGCTACGCACTTTTGTTTAAAC
TACGCCAAGTCCCAACAGGTCAACCAACTCTAGTAAAGGCTTTACTCACA
AACTATTTTGCGGAAATAGAATTCTTTCATGTGTTGTTTTCAGAAATTAT
CGATGATGCTATGGAATATAGTACTAAATCCCTAAAATGGATTCAAGAAC
TATTTGTTTATTATGCTGATACTCAAAATAATATTCTAGAAAATTGGAAA
TTGAAGACAAATCTTGAATGCTGCAAACTTTATGTCAACTTCTTACAGGA
TCAGTCCTCTCAGATTTTTAAATGCGCTACTGTGGATAATCTTAATATAA
TATACGATGTGTATTCCGTAACGAAGCTTAACATAAAATATATACTAAGG
CAACTTGAGTTTCGCATCCAACGATTATTCAATTGTTTATTGTATAACAG
CCCTAACATACAATGTAAGCTTCTTAAAAGAGCAGAGAAAGATCTTAAAA
CCTTATTTAGAAATCTCTCCGAGCTAGACATGTTCATCGATATAAAAACT
AAAAAAGGCAAAGCAGCCGCATTAAGATTTCGTCGAGGAAACACATGGAA
CAGCAATCAAATTAAATTGGAACCGAACCAGAACTACTGCCTTCCAATTG
GCTTTCCAAATACTCAAATGTCAACAGATCTAAAAGAATGCTTTTACTTT
TTAGATAATATAGTGTAACTGCAGTAAATATTACAATAAATAAAATTATT
TAATGACTGTGAAAAAAAAAAAAAAAAAAAAAAA

MIP30541.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 23715735..23716895 1..1161 5790 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23726829..23727989 1..1161 5805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 23719929..23721089 1..1161 5805 100 Plus
Blast to na_te.dros performed 2019-03-15 10:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1640..1721 619..703 112 61.2 Plus

MIP30541.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:42 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 23715735..23716895 1..1161 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-10 09:12:27 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1080 39..1118 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:50 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1080 39..1118 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1080 39..1118 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-10 09:12:26 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1080 39..1118 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:50 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1161 1..1161 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
CG40298-RA 1..1161 1..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23726829..23727989 1..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23726829..23727989 1..1161 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23726829..23727989 1..1161 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:50 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23719929..23721089 1..1161 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:01 Download gff for MIP30541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23719929..23721089 1..1161 100   Plus

MIP30541.pep Sequence

Translation from 38 to 1117

> MIP30541.pep
MNWRSFIVTLINCIVWSIQVIQLNGTGIKNLGRTRDSFRAVQVPQQFYDA
IEQSDFSKHSLQNKLEHFLEKLQKNLTISAVLSDSEDIVTSERNYVYKMR
ELSTFFYEASFSFEQFSSDIQTFYETSKNASYALLFKLRQVPTGQPTLVK
ALLTNYFAEIEFFHVLFSEIIDDAMEYSTKSLKWIQELFVYYADTQNNIL
ENWKLKTNLECCKLYVNFLQDQSSQIFKCATVDNLNIIYDVYSVTKLNIK
YILRQLEFRIQRLFNCLLYNSPNIQCKLLKRAEKDLKTLFRNLSELDMFI
DIKTKKGKAAALRFRRGNTWNSNQIKLEPNQNYCLPIGFPNTQMSTDLKE
CFYFLDNIV*

MIP30541.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG40298-PA 359 CG40298-PA 1..359 1..359 1865 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30256-PA 365 GA30256-PA 15..364 15..357 928 49.4 Plus

MIP30541.hyp Sequence

Translation from 38 to 1117

> MIP30541.hyp
MNWRSFIVTLINCIVWSIQVIQLNGTGIKNLGRTRDSFRAVQVPQQFYDA
IEQSDFSKHSLQNKLEHFLEKLQKNLTISAVLSDSEDIVTSERNYVYKMR
ELSTFFYEASFSFEQFSSDIQTFYETSKNASYALLFKLRQVPTGQPTLVK
ALLTNYFAEIEFFHVLFSEIIDDAMEYSTKSLKWIQELFVYYADTQNNIL
ENWKLKTNLECCKLYVNFLQDQSSQIFKCATVDNLNIIYDVYSVTKLNIK
YILRQLEFRIQRLFNCLLYNSPNIQCKLLKRAEKDLKTLFRNLSELDMFI
DIKTKKGKAAALRFRRGNTWNSNQIKLEPNQNYCLPIGFPNTQMSTDLKE
CFYFLDNIV*

MIP30541.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG40298-PA 359 CG40298-PA 1..359 1..359 1865 100 Plus