Clone Sequence Records
MIP30541.complete Sequence
1184 bp assembled on 2011-06-10
GenBank Submission: BT128741.1
> MIP30541.complete
TATAACGCAGCCTTAGACGAATCAATTTTTTTGTTGTAATGAATTGGCGT
AGTTTTATTGTTACTTTAATAAACTGCATAGTCTGGTCAATACAAGTTAT
TCAATTAAATGGTACTGGAATTAAAAACCTAGGAAGAACAAGAGACTCTT
TTAGAGCGGTACAAGTACCCCAACAGTTTTATGATGCTATCGAACAGTCA
GATTTCAGTAAACATAGTTTACAAAATAAGTTAGAGCATTTCCTTGAAAA
ACTTCAAAAAAACTTGACCATATCGGCAGTATTGAGTGACTCCGAAGATA
TTGTCACAAGTGAAAGAAACTATGTTTACAAGATGCGAGAACTATCAACC
TTCTTTTATGAAGCTTCTTTTTCTTTCGAACAATTTTCTTCTGATATCCA
AACTTTTTATGAAACATCAAAAAATGCAAGCTACGCACTTTTGTTTAAAC
TACGCCAAGTCCCAACAGGTCAACCAACTCTAGTAAAGGCTTTACTCACA
AACTATTTTGCGGAAATAGAATTCTTTCATGTGTTGTTTTCAGAAATTAT
CGATGATGCTATGGAATATAGTACTAAATCCCTAAAATGGATTCAAGAAC
TATTTGTTTATTATGCTGATACTCAAAATAATATTCTAGAAAATTGGAAA
TTGAAGACAAATCTTGAATGCTGCAAACTTTATGTCAACTTCTTACAGGA
TCAGTCCTCTCAGATTTTTAAATGCGCTACTGTGGATAATCTTAATATAA
TATACGATGTGTATTCCGTAACGAAGCTTAACATAAAATATATACTAAGG
CAACTTGAGTTTCGCATCCAACGATTATTCAATTGTTTATTGTATAACAG
CCCTAACATACAATGTAAGCTTCTTAAAAGAGCAGAGAAAGATCTTAAAA
CCTTATTTAGAAATCTCTCCGAGCTAGACATGTTCATCGATATAAAAACT
AAAAAAGGCAAAGCAGCCGCATTAAGATTTCGTCGAGGAAACACATGGAA
CAGCAATCAAATTAAATTGGAACCGAACCAGAACTACTGCCTTCCAATTG
GCTTTCCAAATACTCAAATGTCAACAGATCTAAAAGAATGCTTTTACTTT
TTAGATAATATAGTGTAACTGCAGTAAATATTACAATAAATAAAATTATT
TAATGACTGTGAAAAAAAAAAAAAAAAAAAAAAA
MIP30541.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 23715735..23716895 | 1..1161 | 5790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23726829..23727989 | 1..1161 | 5805 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 23719929..23721089 | 1..1161 | 5805 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 10:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1640..1721 | 619..703 | 112 | 61.2 | Plus |
MIP30541.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:42 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 23715735..23716895 | 1..1161 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-10 09:12:27 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1080 | 39..1118 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:50 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1080 | 39..1118 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1080 | 39..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-10 09:12:26 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1080 | 39..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:50 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1161 | 1..1161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40298-RA | 1..1161 | 1..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23726829..23727989 | 1..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23726829..23727989 | 1..1161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:42 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23726829..23727989 | 1..1161 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:50 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23719929..23721089 | 1..1161 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:01 Download gff for
MIP30541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23719929..23721089 | 1..1161 | 100 | | Plus |
MIP30541.pep Sequence
Translation from 38 to 1117
> MIP30541.pep
MNWRSFIVTLINCIVWSIQVIQLNGTGIKNLGRTRDSFRAVQVPQQFYDA
IEQSDFSKHSLQNKLEHFLEKLQKNLTISAVLSDSEDIVTSERNYVYKMR
ELSTFFYEASFSFEQFSSDIQTFYETSKNASYALLFKLRQVPTGQPTLVK
ALLTNYFAEIEFFHVLFSEIIDDAMEYSTKSLKWIQELFVYYADTQNNIL
ENWKLKTNLECCKLYVNFLQDQSSQIFKCATVDNLNIIYDVYSVTKLNIK
YILRQLEFRIQRLFNCLLYNSPNIQCKLLKRAEKDLKTLFRNLSELDMFI
DIKTKKGKAAALRFRRGNTWNSNQIKLEPNQNYCLPIGFPNTQMSTDLKE
CFYFLDNIV*
MIP30541.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40298-PA | 359 | CG40298-PA | 1..359 | 1..359 | 1865 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30256-PA | 365 | GA30256-PA | 15..364 | 15..357 | 928 | 49.4 | Plus |
MIP30541.hyp Sequence
Translation from 38 to 1117
> MIP30541.hyp
MNWRSFIVTLINCIVWSIQVIQLNGTGIKNLGRTRDSFRAVQVPQQFYDA
IEQSDFSKHSLQNKLEHFLEKLQKNLTISAVLSDSEDIVTSERNYVYKMR
ELSTFFYEASFSFEQFSSDIQTFYETSKNASYALLFKLRQVPTGQPTLVK
ALLTNYFAEIEFFHVLFSEIIDDAMEYSTKSLKWIQELFVYYADTQNNIL
ENWKLKTNLECCKLYVNFLQDQSSQIFKCATVDNLNIIYDVYSVTKLNIK
YILRQLEFRIQRLFNCLLYNSPNIQCKLLKRAEKDLKTLFRNLSELDMFI
DIKTKKGKAAALRFRRGNTWNSNQIKLEPNQNYCLPIGFPNTQMSTDLKE
CFYFLDNIV*
MIP30541.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40298-PA | 359 | CG40298-PA | 1..359 | 1..359 | 1865 | 100 | Plus |