Clone MIP30813 Report

Search the DGRC for MIP30813

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:308
Well:13
Vector:pOT2
Associated Gene/TranscriptCG13058-RA
Protein status:MIP30813.pep: gold
Sequenced Size:734

Clone Sequence Records

MIP30813.complete Sequence

734 bp assembled on 2011-06-14

GenBank Submission: BT128748.1

> MIP30813.complete
CTCAAGTGACCATCATGCACATCACGGTTGTTTGCCTCGTATTCACCTGG
GGCCTGAGCCACAGTCACGCAGCCACGACAATCCTGCATGGCAACGGACA
GGTGGCCAGTGCCATTTCCCACCAGAGCTTCAGCAGATTATCCTCAGCAG
AGCCACTAACCCTGCAGTCCCGAAAGCAAACACATCAGCTGCTCGTTCCC
TCTGCCAGGATTGTTAATCATCACCAGGCGGCAGTGGAACGACAGCAGGT
GGAGAGGTTCTTTCAGGCGGCAACGGCGGAGGCGGAGGAGGTGCCTGTCA
TCTCTGGACAGACACCCGCCCATCTCACCTACGCTGCCCATCCAGTGGTG
CACCAGATGCTGCCAAGGATTAAGCCAGTGCGAAACATTAGCTACGCCTC
CCTGATCCCAGGACCTCGCAGCCTGAACACTCATACGAATCGGAATTTGT
CACCCGTTTGAGGTGCTATATATTATATTAAATTAAAGCTTTGGTTTAGG
CTTTTATTCAATTCAACTACTAAAACATCAAGCAGTAACACTTAACACTC
ACATTCGACTCAAGTGCTTGTGAATAAAACTCGAATACTTTTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP30813.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16318697..16319264 26..593 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16328967..16329535 26..594 2845 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16322067..16322635 26..594 2845 100 Plus
3L 28103327 3L 16321954..16321981 1..28 140 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:43:34 has no hits.

MIP30813.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:44:41 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16318584..16318609 1..26 100 -> Plus
chr3L 16318698..16319264 27..593 96   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-14 11:54:13 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:24:19 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:10:59 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 11:54:13 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 16..608 1..593 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:24:19 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 14..606 1..593 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:59 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
CG13058-RA 14..606 1..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:41 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16328854..16328879 1..26 100 -> Plus
3L 16328968..16329534 27..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:41 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16328854..16328879 1..26 100 -> Plus
3L 16328968..16329534 27..593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:44:41 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16328854..16328879 1..26 100 -> Plus
3L 16328968..16329534 27..593 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:24:19 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16321954..16321979 1..26 100 -> Plus
arm_3L 16322068..16322634 27..593 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:08:39 Download gff for MIP30813.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16322068..16322634 27..593 100   Plus
3L 16321954..16321979 1..26 100 -> Plus

MIP30813.pep Sequence

Translation from 2 to 460

> MIP30813.pep
QVTIMHITVVCLVFTWGLSHSHAATTILHGNGQVASAISHQSFSRLSSAE
PLTLQSRKQTHQLLVPSARIVNHHQAAVERQQVERFFQAATAEAEEVPVI
SGQTPAHLTYAAHPVVHQMLPRIKPVRNISYASLIPGPRSLNTHTNRNLS
PV*

MIP30813.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24183-PA 133 GF24183-PA 1..133 5..152 325 59.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15988-PA 148 GG15988-PA 1..148 5..152 653 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15879-PA 383 GH15879-PA 20..125 24..148 179 45.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13058-PA 148 CG13058-PA 1..148 5..152 759 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28514-PA 166 GA28514-PA 26..152 24..145 272 51.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25619-PA 147 GM25619-PA 1..147 5..152 708 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14624-PA 122 GD14624-PA 10..122 39..152 541 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12781-PA 140 GJ12781-PA 26..136 26..146 206 50.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19553-PA 147 GE19553-PA 1..147 5..152 658 86.5 Plus
Dyak\GE19550-PA 161 GE19550-PA 1..161 5..152 622 79 Plus

MIP30813.hyp Sequence

Translation from 2 to 460

> MIP30813.hyp
QVTIMHITVVCLVFTWGLSHSHAATTILHGNGQVASAISHQSFSRLSSAE
PLTLQSRKQTHQLLVPSARIVNHHQAAVERQQVERFFQAATAEAEEVPVI
SGQTPAHLTYAAHPVVHQMLPRIKPVRNISYASLIPGPRSLNTHTNRNLS
PV*

MIP30813.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13058-PA 148 CG13058-PA 1..148 5..152 759 100 Plus