Clone MIP30847 Report

Search the DGRC for MIP30847

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:308
Well:47
Vector:pOT2
Associated Gene/TranscriptCG34268-RA
Protein status:MIP30847.pep: gold
Sequenced Size:453

Clone Sequence Records

MIP30847.complete Sequence

453 bp assembled on 2011-06-09

GenBank Submission: BT128725.1

> MIP30847.complete
CACAAACGTTCGATAACCACAAGTTAAAGTTTTTAACTCACAACAAAATA
CCAAAATGTTCCGCATTATCGCTGTAATCTTCGCCCTGGTAGCAATGGCT
TTTGCTGCTCCTGGTTACATTGAGCCCTCCTACGGAGTGGTTCCTGTGGC
CCAGGTGGTGCCCGTGGTGAAATCTGTTCCGGTGGTGAAGCATGTTCCAG
TGGTGCAGCATGTTCCGGTGGTGAAAAATGTCCCAGTGGTTCAGCATGTC
CCTGTGCTGAAGTCCTACGCTGTTCCCACCTATGGACACCACATCTACCA
TGGTTAAATTATTGTAGCACAACCCCATTAGAAATTGACCCGACATAAAT
AAATTGCCAACCAAATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

MIP30847.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 500962..501264 68..370 1515 100 Plus
chr3L 24539361 chr3L 499936..500160 310..68 805 89.7 Minus
chr3L 24539361 chr3L 500832..500898 1..67 335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 501100..501402 68..370 1515 100 Plus
3L 28110227 3L 500074..500298 310..68 805 89.7 Minus
3L 28110227 3L 500970..501036 1..67 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 501100..501402 68..370 1515 100 Plus
3L 28103327 3L 500128..500298 238..68 600 90 Minus
3L 28103327 3L 500074..500202 310..182 555 95.3 Minus
3L 28103327 3L 500970..501036 1..67 335 100 Plus
Blast to na_te.dros performed 2019-03-15 10:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 3680..3739 81..22 120 66.7 Minus

MIP30847.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:37:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 500832..500898 1..67 100 -> Plus
chr3L 500962..501262 68..368 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-09 11:48:10 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 1..252 56..307 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:01 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 1..252 56..307 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:08:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 1..252 56..307 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-09 11:48:09 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 7..345 1..339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:01 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 6..373 1..368 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
CG34268-RA 6..373 1..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 500970..501036 1..67 100 -> Plus
3L 501100..501400 68..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 500970..501036 1..67 100 -> Plus
3L 501100..501400 68..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:38 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 500970..501036 1..67 100 -> Plus
3L 501100..501400 68..368 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:01 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 501100..501400 68..368 100   Plus
arm_3L 500970..501036 1..67 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:07:40 Download gff for MIP30847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 501100..501400 68..368 100   Plus
3L 500970..501036 1..67 100 -> Plus

MIP30847.pep Sequence

Translation from 55 to 306

> MIP30847.pep
MFRIIAVIFALVAMAFAAPGYIEPSYGVVPVAQVVPVVKSVPVVKHVPVV
QHVPVVKNVPVVQHVPVLKSYAVPTYGHHIYHG*

MIP30847.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14724-PA 92 GG14724-PA 1..92 1..83 148 59.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG34268-PA 83 CG34268-PA 1..83 1..83 429 100 Plus
CG34267-PA 77 CG34267-PA 1..77 1..83 380 92.8 Plus
CG15308-PB 95 CG15308-PB 5..70 5..70 140 48.5 Plus
CG15308-PC 82 CG15308-PC 1..57 14..70 134 52.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14341-PA 83 GM14341-PA 1..83 1..83 371 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11017-PA 83 GD11017-PA 1..83 1..83 371 97.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21086-PA 77 GE21086-PA 1..77 1..83 155 80.7 Plus

MIP30847.hyp Sequence

Translation from 55 to 306

> MIP30847.hyp
MFRIIAVIFALVAMAFAAPGYIEPSYGVVPVAQVVPVVKSVPVVKHVPVV
QHVPVVKNVPVVQHVPVLKSYAVPTYGHHIYHG*

MIP30847.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG34268-PA 83 CG34268-PA 1..83 1..83 429 100 Plus
CG34267-PA 77 CG34267-PA 1..77 1..83 380 92.8 Plus
CG15308-PB 95 CG15308-PB 5..70 5..70 140 48.5 Plus
CG15308-PC 82 CG15308-PC 1..57 14..70 134 52.6 Plus