Clone MIP31361 Report

Search the DGRC for MIP31361

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:313
Well:61
Vector:pOT2
Associated Gene/TranscriptCG4116-RB
Protein status:MIP31361.pep: gold
Sequenced Size:890

Clone Sequence Records

MIP31361.complete Sequence

890 bp assembled on 2011-06-09

GenBank Submission: BT128718.1

> MIP31361.complete
CCATCGTCCAGAAATGATCTACGCAATTCTAGTGCTCTGTCTGCTGGGCA
GTTGTTGCCCAGCAATGGCCCAGAAGGTCGAAAAGGATCCGCTGGCCAAG
GAACAAAATACCCGTTTGGCCGGCATCTATGTGAAGGATGGCAACGAAAA
TGGCCAGCTGAGATTCCTGGCATCGGGCTTGAACAGTGGCAGCAGCAGCA
CCAGCTCTTCAAACACCGGTATCAACTCGGCCCTGAATCAGTACATAACC
AATAAGCAGGATATGCTGGAGCAACTGCGTCCCACTTCGGGCACCACATC
AACGGGAACGGGAGCTGTTACGGGCACATCGACGGGAACAACAGGAACGA
CTTCGGGAACCGGAACTGGCCTGGTCACCACGACTTCCAATGGAGCTATC
TATGTGAACCTGGGCAGTTCGGGATCCTCATCATCATCGTCTTCCTCCTC
GTCGGCCACCAATGCGGCCATTAATCAGGTCATCTATGGATCCTCGCCAG
TTGCCGGTCTCTTGCCGCAGATCGTTGGCCAGGCGGTGTCCAGTCGAGTG
CGTCCCGGTGGCCAGAACAATAGGAGGCGCGTTCCCGCCCGTAGGCGCCG
GGTCAACAAGAGGCGTGGCAGCATTAACAACAACAATCAGCGACGTCGCC
GGCGTGGCAACAAGCGGGGCAAGAATAAGGCCCAGGTGATGGTGGTGCGA
CCAAATCGCGGTTGAGAAGAGGATCCACCGCCTTTCTTAGTTAAGCGAAA
AATTACTTTTTTTTTGCCCCCCAGCCAAGGAATTTTTTTTTTTTTAATGA
TTACTATTAGTATGCGAGAAGGCAACCTTATTTATTTATTTAAATGATTG
AAAGCAATTACACTCTGCAAAAAAAAAAAAAAAAAAAAAA

MIP31361.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2960343..2961209 868..1 4230 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3066613..3067482 870..1 4350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3074711..3075580 870..1 4350 100 Minus
Blast to na_te.dros performed 2019-03-15 10:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6840..7049 182..381 134 55.9 Plus

MIP31361.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:25 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2960343..2961209 1..868 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-09 13:06:39 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..795 1..715 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:16 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..795 1..715 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:08:54 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..795 1..715 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-09 13:06:39 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..795 1..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:16 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..948 1..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:54 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
CG4116-RA 81..948 1..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:25 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
X 3066615..3067482 1..868 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:25 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
X 3066615..3067482 1..868 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:25 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
X 3066615..3067482 1..868 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:16 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2960648..2961515 1..868 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:07:46 Download gff for MIP31361.complete
Subject Subject Range Query Range Percent Splice Strand
X 3074713..3075580 1..868 100   Minus

MIP31361.hyp Sequence

Translation from 0 to 714

> MIP31361.hyp
HRPEMIYAILVLCLLGSCCPAMAQKVEKDPLAKEQNTRLAGIYVKDGNEN
GQLRFLASGLNSGSSSTSSSNTGINSALNQYITNKQDMLEQLRPTSGTTS
TGTGAVTGTSTGTTGTTSGTGTGLVTTTSNGAIYVNLGSSGSSSSSSSSS
SATNAAINQVIYGSSPVAGLLPQIVGQAVSSRVRPGGQNNRRRVPARRRR
VNKRRGSINNNNQRRRRRGNKRGKNKAQVMVVRPNRG*

MIP31361.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4116-PA 264 CG4116-PA 28..264 1..237 1192 100 Plus
CG4116-PB 233 CG4116-PB 1..233 5..237 1167 100 Plus
CG13560-PB 181 CG13560-PB 20..181 57..219 176 32.1 Plus
CG13560-PA 181 CG13560-PA 20..181 57..219 176 32.1 Plus

MIP31361.pep Sequence

Translation from 1 to 714

> MIP31361.pep
HRPEMIYAILVLCLLGSCCPAMAQKVEKDPLAKEQNTRLAGIYVKDGNEN
GQLRFLASGLNSGSSSTSSSNTGINSALNQYITNKQDMLEQLRPTSGTTS
TGTGAVTGTSTGTTGTTSGTGTGLVTTTSNGAIYVNLGSSGSSSSSSSSS
SATNAAINQVIYGSSPVAGLLPQIVGQAVSSRVRPGGQNNRRRVPARRRR
VNKRRGSINNNNQRRRRRGNKRGKNKAQVMVVRPNRG*

MIP31361.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19619-PA 199 GF19619-PA 2..199 51..237 253 60.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18594-PA 235 GG18594-PA 1..235 5..237 611 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12261-PA 235 GH12261-PA 1..189 5..189 266 43.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4116-PA 264 CG4116-PA 28..264 1..237 1192 100 Plus
CG4116-PB 233 CG4116-PB 1..233 5..237 1167 100 Plus
CG13560-PB 181 CG13560-PB 20..181 57..219 176 32.1 Plus
CG13560-PA 181 CG13560-PA 20..181 57..219 176 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10954-PA 242 GI10954-PA 10..91 10..96 180 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17969-PA 285 GA17969-PA 48..285 4..237 412 65.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18844-PA 265 GM18844-PA 28..265 1..237 623 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16343-PA 257 GD16343-PA 28..257 1..237 538 84.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15273-PA 235 GJ15273-PA 5..235 6..237 352 49.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25536-PA 237 GK25536-PA 5..237 6..237 240 51.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16908-PA 263 GE16908-PA 28..263 1..237 588 82.9 Plus