Clone MIP31873 Report

Search the DGRC for MIP31873

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:318
Well:73
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG43076-RA
Protein status:MIP31873.pep: gold
Sequenced Size:794

Clone Sequence Records

MIP31873.complete Sequence

794 bp assembled on 2011-06-09

GenBank Submission: BT128727.1

> MIP31873.complete
ATTTTCGATTTGAACGAAACGCATATTCATACATTCTTTTCGAGATATTT
TATAAGTTTTGTAAATTCACTCATTCTAAATAACGTCATTTCGCTATGAG
TTCTATCGAGTGGATCGCTGATATGCTTTTCTACGCTATGCGCACCTACC
TCAAGATGACCGCACCCAGTTGCGATGCACACTTCCTTATCAATGCCCTT
GGAAAGATTGAACATCTTATACATTTCATTGAATTTTCCATTATGATAAT
ACGGCGGCCAAGAAATCTCATGGTTTTGACTAATAGCCGAGAGAGCCGCC
TTCAACTCCGCAATTGCCTTTCAATGTTAAGGACTTGGGCACAAGTGATA
TACGCATTGCTATCCGTGCTTGCTTTAATCCATATCAAAACGATTTACAT
TAGTATCGCGCTGTTGATTTCCGGCATCGTCTTGTTCACTGATATGATCT
TCATGGCAATAAATGGCGTACATGGCAGGAGAACGCTGCGACCCGCGCAG
ATTCTATGGATTTCGTTGTGTTGTTGCACTTGGGTGCCATGGATCCTGGA
CGAAATGATCAACTATTTGTATAAATGATGGACGCAATGGCAATGTTGGA
CTTTTTATCTTTTAAAATTATCCGTGATATGTATGGGAAATAAAGGATTA
CACACCTAATCCTACATTCTCAATTCGTTCACGTGGATGTCTGTGGACTT
ATTGCGACGACTGTATACTTTCAATTTGACAAAAGTTTTGAGCTTAATTA
AATTTGTTGCTGCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP31873.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15112783..15113181 766..368 1995 100 Minus
chrX 22417052 chrX 15113498..15113703 206..1 1030 100 Minus
chrX 22417052 chrX 15113274..15113437 368..205 820 100 Minus
chrX 22417052 chrX 15866751..15866929 23..201 370 80.4 Plus
chrX 22417052 chrX 15110354..15110434 765..685 345 95.1 Minus
chrX 22417052 chrX 15867305..15867411 485..591 250 82.2 Plus
chrX 22417052 chrX 15095818..15095916 755..656 225 84 Minus
chrX 22417052 chrX 15867020..15867157 231..368 180 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15222658..15223056 766..368 1995 100 Minus
X 23542271 X 15223373..15223578 206..1 1030 100 Minus
X 23542271 X 15223149..15223312 368..205 820 100 Minus
X 23542271 X 15976910..15977088 23..201 370 80.4 Plus
X 23542271 X 15220229..15220309 765..685 330 93.8 Minus
X 23542271 X 15977465..15977571 485..591 250 82.2 Plus
X 23542271 X 15205710..15205808 755..656 225 84 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15230756..15231154 766..368 1995 100 Minus
X 23527363 X 15231471..15231676 206..1 1030 100 Minus
X 23527363 X 15231247..15231410 368..205 820 100 Minus
X 23527363 X 15985008..15985186 23..201 370 80.4 Plus
X 23527363 X 15228327..15228407 765..685 330 93.8 Minus
X 23527363 X 15985563..15985669 485..591 250 82.2 Plus
X 23527363 X 15213808..15213906 755..656 235 84 Minus
Blast to na_te.dros performed 2019-03-15 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5878..6055 762..590 112 55.6 Minus

MIP31873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:42:36 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15112782..15113180 369..767 99 <- Minus
chrX 15113274..15113435 207..368 100 <- Minus
chrX 15113498..15113703 1..206 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-06-09 17:41:29 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 1..483 96..578 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:22:38 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 1..483 96..578 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:09:18 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 1..483 96..578 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-09 17:41:28 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 1..686 81..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:22:38 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 1..686 81..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:18 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
CG43076-RA 5..770 1..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:36 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
X 15223373..15223578 1..206 100   Minus
X 15222657..15223055 369..767 99 <- Minus
X 15223149..15223310 207..368 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:36 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
X 15223373..15223578 1..206 100   Minus
X 15222657..15223055 369..767 99 <- Minus
X 15223149..15223310 207..368 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:42:36 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
X 15223373..15223578 1..206 100   Minus
X 15222657..15223055 369..767 99 <- Minus
X 15223149..15223310 207..368 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:22:38 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15117406..15117611 1..206 100   Minus
arm_X 15117182..15117343 207..368 100 <- Minus
arm_X 15116690..15117088 369..767 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:07:56 Download gff for MIP31873.complete
Subject Subject Range Query Range Percent Splice Strand
X 15230755..15231153 369..767 99 <- Minus
X 15231247..15231408 207..368 100 <- Minus
X 15231471..15231676 1..206 100   Minus

MIP31873.pep Sequence

Translation from 95 to 577

> MIP31873.pep
MSSIEWIADMLFYAMRTYLKMTAPSCDAHFLINALGKIEHLIHFIEFSIM
IIRRPRNLMVLTNSRESRLQLRNCLSMLRTWAQVIYALLSVLALIHIKTI
YISIALLISGIVLFTDMIFMAINGVHGRRTLRPAQILWISLCCCTWVPWI
LDEMINYLYK*

MIP31873.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG43076-PA 160 CG43076-PA 1..160 1..160 831 100 Plus
CG42766-PA 98 CG42766-PA 1..98 1..98 248 51 Plus
CG42766-PB 98 CG42766-PB 1..92 1..92 223 50 Plus
CG43075-PA 174 CG43075-PA 1..174 1..157 153 26.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17259-PA 84 GD17259-PA 1..78 15..92 218 55.1 Plus
Dsim\GD15815-PA 66 GD15815-PA 1..37 1..37 164 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16063-PA 180 GE16063-PA 1..178 1..156 150 26.1 Plus
Dyak\GE16065-PA 180 GE16065-PA 1..178 1..156 140 25.5 Plus

MIP31873.hyp Sequence

Translation from 95 to 577

> MIP31873.hyp
MSSIEWIADMLFYAMRTYLKMTAPSCDAHFLINALGKIEHLIHFIEFSIM
IIRRPRNLMVLTNSRESRLQLRNCLSMLRTWAQVIYALLSVLALIHIKTI
YISIALLISGIVLFTDMIFMAINGVHGRRTLRPAQILWISLCCCTWVPWI
LDEMINYLYK*

MIP31873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG43076-PA 160 CG43076-PA 1..160 1..160 831 100 Plus
CG42766-PA 98 CG42766-PA 1..98 1..98 248 51 Plus
CG42766-PB 98 CG42766-PB 1..92 1..92 223 50 Plus
CG43075-PA 174 CG43075-PA 1..174 1..157 153 26.7 Plus