Clone MIP31974 Report

Search the DGRC for MIP31974

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:319
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG12507-RB
Protein status:MIP31974.pep: gold
Sequenced Size:1118

Clone Sequence Records

MIP31974.complete Sequence

1118 bp assembled on 2011-08-12

GenBank Submission: BT128793.1

> MIP31974.complete
GCCTTCGACCTGGCACTCCGAGCGCATCGGCTGTACTTCTGCACGATGTC
CGAGAATAGAGTAATCCATATGTGGATGCGATGTCTGATGCCACTGCTGC
TGGCCAACTGCATTGCGGCGAATCCCAGTTTCGAGGATCCTGACCGTAGT
TTGGATATGGAGGCGAAGGACAGCAGCGTGGTGGATACTATGGGCATGGG
CATGGGCGTCCTGGATCCTACGCAGCCAAAGCAGATGAATTACCAGAAGC
CGCCATTGGGTTACAAGGACTACGATTACTATCTGGGATCTCGACGAATG
GCAGATCCCTATGGGGCCGATAATGATCTGAGTGCCTCGTCCGCCATTAA
GATTCATGGCGAAGGCAATTTGGCTTCGCTAAACAGGCCAGTCAGTGGTG
TCGCCCACAAACCACTGCCCTGGTATGGCGATTATTCCGGCAAACTGCTG
GCCAGTGCTCCCCCGATGTACCCGTCCAGGTCCTACGATCCCTATATTCG
CCGCTACGACAGATATGATGAGCAGTACCATAGGAACTATCCACAGTACT
TTGAGGACATGTACATGCACCGGCAACGTTTCGATCCGTATGATAGCTAT
AGTCCCCGGATACCGCAGTATCCGGAACCCTACGTTATGTATCCCGACCG
CTACCCGGATGCCCCGCCTTTGAGGGATTATCCGAAATTGCGGCGCGGAT
ACATCGGTGAACCCATGGCGCCCATCGATTCCTACAGCAGCAGCAAGTAC
GTCTCTTCGAAGCAGTCCGACCTGAGTTTTCCGGTTCGTAACGAACGCAT
CGTATACTACGCCCACCTGCCGGAAATCGTACGGACACCATATGATAGTG
GATCACCGGAGGATCGAAACTCGGCGCCTTACAAGCTGAACAAGAAGAAA
ATCAAAAATATTCAGCGGCCTTTAGCGAATAATTCTACCACGTATAAAAT
GACATTGTAGAAGGGGATTTTAGAATGTAAGATCCATTTTTTTTTTTCAT
TATTCGTATGCATTTGTATTTGTCACCCATGGAAATTAGCACCAAGTTCA
GTGTACCAGCACATTGATTAAAAATATCGAGGTGAGCTTATTAGCAATAA
AACAAAAAAAAAAAAAAA

MIP31974.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16154961..16155548 1087..510 2635 96.9 Minus
chrX 22417052 chrX 16155735..16156244 512..3 2445 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16265242..16265830 1098..510 2945 100 Minus
X 23542271 X 16266028..16266537 512..3 2550 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16273340..16273928 1098..510 2945 100 Minus
X 23527363 X 16274126..16274635 512..3 2550 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:52:53 has no hits.

MIP31974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:53:38 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16154948..16155545 513..1098 96 <- Minus
chrX 16155735..16156247 1..512 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-08-12 16:54:09 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..915 46..960 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:28:39 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..915 46..960 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:15:11 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..915 46..960 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-12 16:54:09 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..915 46..960 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:28:39 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..1096 3..1098 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:11 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
CG12507-RB 1..1096 3..1098 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:53:38 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
X 16265242..16265827 513..1098 100 <- Minus
X 16266028..16266540 1..512 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:53:38 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
X 16265242..16265827 513..1098 100 <- Minus
X 16266028..16266540 1..512 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:53:38 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
X 16265242..16265827 513..1098 100 <- Minus
X 16266028..16266540 1..512 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:28:39 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16159275..16159860 513..1098 100 <- Minus
arm_X 16160061..16160573 1..512 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:46:06 Download gff for MIP31974.complete
Subject Subject Range Query Range Percent Splice Strand
X 16273340..16273925 513..1098 100 <- Minus
X 16274126..16274638 1..512 99   Minus

MIP31974.hyp Sequence

Translation from 0 to 959

> MIP31974.hyp
HFDLALRAHRLYFCTMSENRVIHMWMRCLMPLLLANCIAANPSFEDPDRS
LDMEAKDSSVVDTMGMGMGVLDPTQPKQMNYQKPPLGYKDYDYYLGSRRM
ADPYGADNDLSASSAIKIHGEGNLASLNRPVSGVAHKPLPWYGDYSGKLL
ASAPPMYPSRSYDPYIRRYDRYDEQYHRNYPQYFEDMYMHRQRFDPYDSY
SPRIPQYPEPYVMYPDRYPDAPPLRDYPKLRRGYIGEPMAPIDSYSSSKY
VSSKQSDLSFPVRNERIVYYAHLPEIVRTPYDSGSPEDRNSAPYKLNKKK
IKNIQRPLANNSTTYKMTL*

MIP31974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12507-PB 304 CG12507-PB 1..304 16..319 1657 100 Plus

MIP31974.pep Sequence

Translation from 0 to 959

> MIP31974.pep
AFDLALRAHRLYFCTMSENRVIHMWMRCLMPLLLANCIAANPSFEDPDRS
LDMEAKDSSVVDTMGMGMGVLDPTQPKQMNYQKPPLGYKDYDYYLGSRRM
ADPYGADNDLSASSAIKIHGEGNLASLNRPVSGVAHKPLPWYGDYSGKLL
ASAPPMYPSRSYDPYIRRYDRYDEQYHRNYPQYFEDMYMHRQRFDPYDSY
SPRIPQYPEPYVMYPDRYPDAPPLRDYPKLRRGYIGEPMAPIDSYSSSKY
VSSKQSDLSFPVRNERIVYYAHLPEIVRTPYDSGSPEDRNSAPYKLNKKK
IKNIQRPLANNSTTYKMTL*

MIP31974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19641-PA 297 GF19641-PA 10..297 26..319 689 50.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19339-PA 298 GG19339-PA 1..298 16..315 1390 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12156-PA 299 GH12156-PA 11..299 38..319 563 49.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12507-PB 304 CG12507-PB 1..304 16..319 1657 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10901-PA 310 GI10901-PA 6..310 24..319 650 49.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15897-PA 312 GL15897-PA 7..312 32..319 794 59.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11669-PA 305 GA11669-PA 7..305 32..319 797 61 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12970-PA 292 GM12970-PA 1..292 26..319 1455 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18547-PA 305 GJ18547-PA 6..305 24..319 743 54.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25251-PA 326 GK25251-PA 9..326 28..319 620 50.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15983-PA 308 GE15983-PA 1..308 16..319 1316 92.5 Plus