Clone MIP34652 Report

Search the DGRC for MIP34652

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:346
Well:52
Vector:pOTB7
Associated Gene/Transcriptglob2-RC
Protein status:MIP34652.pep: gold
Sequenced Size:2379

Clone Sequence Records

MIP34652.complete Sequence

2379 bp assembled on 2012-02-29

GenBank Submission: BT133287.1

> MIP34652.complete
GTAAGCATTGTTACGCCTATCAGAATTAGTCTGAAAAGCACAAAGTCCAT
ATGTAGAAACTAAGTAACAAGGTGCCCGTTGAAAAGTCCAAGGAAATGAG
CCAAATCAGCAAACTAACCCACATAAGCCGCATAAGCCAAAACAATCAGT
CGGACGGGAGTGATGAGGATAAGTTTCGCCGTGCGAATTTTCCGGTTTAC
CCAAAACCGCTACCTGATCGAGATTTGAGCTACAAAGCTGACGAAAATGA
GTTCACAATGGTGGAGAAGGCGTCCTTGCGGAATGCCTGGCGTTTAATTG
AGCCATTTCAGCGCCGATTTGGCAAGGAAAATTTTTACAGTTTCCTTACG
AGGAACGAGGATCTCATAAACTTTTTCAGGAAAGATGGAAAGATTAACCT
GAGTAAGCTGCACGGGCATGCCATGGCAATGATGAAGCTGATGTCAAAGC
TGGTCCAAACACTGGATTGCAATCTAGCTTTCCGCTTGGCCTTGGATGAG
AATCTTCCCACACATCTGAAGAATGGCATCGATCCGGATTATATGAGGAT
GCTGGCCACCGCACTGAAGAGTTATATCCTTGCGTCTTCCGTTATCGAAA
ATCACAACTCATGTTCACTAAGCAATGGTCTGGCCCGTCTGGTGGAGATC
GTCGACTCAGATTGCCTTGCATCCCTGGACAAAGGAAACGAGATTTTTTT
TGGAAATCTCCCCGTGCCATGCATCACAGAGGGACCGTTGCGAATTGGCA
ACTAATCTAAGGCCTCCGCACTCGCATGCATATAAATCCAGCAACCACAG
ACAGATTTTGCCACAGTTGCAGGCGGTGACCGGGCAGGCACCTCAAATTA
AATTAAGCCATAATTTATTTCCCATGGAGACGGGCGAGGAGACACCAGCC
CACAGAGCTCAAAATTCAAATGCCCAACAAAAATATGGCACTAAGAGCTG
CTGCTTCTGCAGCGGTTAAAACACGCACACACACAAAGACACTCGGGGAA
ACGAGGAGCCAGCTGAGAGGAGGATTTATTGGAATTCCATCAATGGCGAG
GCAGGAACTCCTCTGTTCCCGATTCGCATGGCAGGCATCCCACTGTGACC
AGCACGAACTCTAACTGCAGGACATGCTTTGGACATCAGTGATGCGAAGT
GGCGACTACGAAAGGAAGCTGACCGGAAGGACAGCAAATAGCAATCTCGC
TAACCTTTTCAAAAACGTGCAACATGAATGTACTATGTGTACATTGAAAC
GAATTTGAATATCATATGATTATCATCATGAAGTAATCTTTACTGATGTT
CAAGGATCGCTCCTCCCCAACACCTTTTGATCAACTGTCTGTGCTTAAAA
AAAGGACTAAATTAATTTTGAGTTTCAAGGTAAATTTAACTGATATACGC
AGTTCGACTTTAACCATAATCAATAGCCAGACGTTTGGACGTCACCTCCG
ATTAGAAGTGCAAGCCTTTCCTTTCGGAGGAGGGGATTCGGACAGGAGGG
AACTTTGTGACCCGCAGGAGGCACGGGATTGGCACGACGAGGGACTTTGG
CACGGATGGCTCATCATAAATACAAAGCAGGCCGGCGCTTTGTCAGGCAT
CCTTCGACACTTTTATTGGCCCGGTCTGTCGGGGTGGACTGCTGGCCATT
CTGCAGGAGAATCCCCCATTTCCTGGGAAGGGGTGGCCGTCATCGATATG
CCAGCAGCATCCTGCACTTGCCGCTGCTCCTTGCTATTTCGCCCCCGGAT
CCGCCGCCTCCGGCTTTTTCCTGCTAGCTCTGGACCTGCTCTTTGTGCCA
GGCAAATGAAATTGAAAATTTTTATGATGCCAACACCAGGGTAGCAAATA
GAATGTTGAAAATTTAAGGAGCTGCATAAAGCTGGTTAATCCGCCAGCTG
ATTAAGACGAGATTGAGCAGCGCCCGGGGTCGGACACCTCTTGACATTAA
TGGCGAAGTCAAAGCCAAAGTCTGTATAATTTTTATGACCACCGATGGGC
TACACGTGCTGCTCGAAAATGTTTATGGCGCCCACTGTGGAAACTGGAAG
CTGTGGAAAAGTGCAGCTCGAATATTTTCTAGGGCGGAACTCTTGAGCTA
AACGAGTTAGCATTTCGGGGCGAAGGGCGTTCAGAAAAGTAGCTGGCAAG
TAACAAGCTTAACCGCAAAAGTTTTAAATAAACTTTTGTTGCTGTTGTTC
CTGGCAAAAATATATTTGCAGAATGCGTCCACGCGAGCGGCATAACTATA
ACTTCCGATTCCGTTGGCTGGCTTTGGCTGGGAATGTAAATGGGTGTGTG
GATGGGCCGTGGGACCCGCTGCCTTGTAATACAGTTAAATATAAATTCAA
AAAATAAAAAAAAAAAAAAAAAAAAAAAA

MIP34652.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2431787..2433488 2355..654 8450 99.8 Minus
chr3R 27901430 chr3R 2434384..2434723 340..1 1700 100 Minus
chr3R 27901430 chr3R 2434124..2434333 548..339 1050 100 Minus
chr3R 27901430 chr3R 2433891..2433997 654..548 535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6605996..6607698 2356..654 8470 99.8 Minus
3R 32079331 3R 6608594..6608933 340..1 1700 100 Minus
3R 32079331 3R 6608334..6608543 548..339 1050 100 Minus
3R 32079331 3R 6608101..6608207 654..548 535 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:54:22 has no hits.

MIP34652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:55:05 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2434124..2434331 341..548 100 <- Minus
chr3R 2431787..2433487 655..2355 99 <- Minus
chr3R 2433891..2433996 549..654 100 <- Minus
chr3R 2434384..2434723 1..340 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-02-29 12:37:13 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RB 1..564 96..660 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:52:50 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RC 1..660 96..755 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:15:08 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RC 1..660 96..755 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-29 12:37:13 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RB 1..640 20..660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:52:50 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RC 1..2336 20..2355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:15:08 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
glob2-RC 1..2336 20..2355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:55:05 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6605997..6607697 655..2355 99 <- Minus
3R 6608101..6608206 549..654 100 <- Minus
3R 6608334..6608541 341..548 100 <- Minus
3R 6608594..6608933 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:55:05 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6605997..6607697 655..2355 99 <- Minus
3R 6608101..6608206 549..654 100 <- Minus
3R 6608334..6608541 341..548 100 <- Minus
3R 6608594..6608933 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:55:05 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6605997..6607697 655..2355 99 <- Minus
3R 6608101..6608206 549..654 100 <- Minus
3R 6608334..6608541 341..548 100 <- Minus
3R 6608594..6608933 1..340 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:52:50 Download gff for MIP34652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2431719..2433419 655..2355 99 <- Minus
arm_3R 2433823..2433928 549..654 100 <- Minus
arm_3R 2434056..2434263 341..548 100 <- Minus
arm_3R 2434316..2434655 1..340 100   Minus

MIP34652.hyp Sequence

Translation from 95 to 754

> MIP34652.hyp
MSQISKLTHISRISQNNQSDGSDEDKFRRANFPVYPKPLPDRDLSYKADE
NEFTMVEKASLRNAWRLIEPFQRRFGKENFYSFLTRNEDLINFFRKDGKI
NLSKLHGHAMAMMKLMSKLVQTLDCNLAFRLALDENLPTHLKNGIDPDYM
RMLATALKSYILASSVIENHNSCSLSNGLARLVEIVDSDCLASLDKGNEI
FFGNLPVPCITEGPLRIGN*

MIP34652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
glob2-PC 219 CG15180-PC 1..219 1..219 1138 100 Plus
glob2-PB 222 CG15180-PB 1..186 1..186 958 100 Plus
glob2-PD 209 CG15180-PD 1..173 1..186 867 93 Plus
glob3-PA 196 CG14675-PA 18..164 35..184 227 36 Plus

MIP34652.pep Sequence

Translation from 95 to 754

> MIP34652.pep
MSQISKLTHISRISQNNQSDGSDEDKFRRANFPVYPKPLPDRDLSYKADE
NEFTMVEKASLRNAWRLIEPFQRRFGKENFYSFLTRNEDLINFFRKDGKI
NLSKLHGHAMAMMKLMSKLVQTLDCNLAFRLALDENLPTHLKNGIDPDYM
RMLATALKSYILASSVIENHNSCSLSNGLARLVEIVDSDCLASLDKGNEI
FFGNLPVPCITEGPLRIGN*

MIP34652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16358-PA 206 GF16358-PA 23..169 28..186 573 66.7 Plus
Dana\GF16359-PA 206 GF16359-PA 14..172 25..184 197 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10391-PA 222 GG10391-PA 1..186 1..186 909 88.7 Plus
Dere\GG13071-PA 225 GG13071-PA 17..164 34..184 234 37.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18925-PA 208 GH18925-PA 6..174 11..184 274 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
glob2-PC 219 CG15180-PC 1..219 1..219 1138 100 Plus
glob2-PB 222 CG15180-PB 1..186 1..186 958 100 Plus
glob2-PD 209 CG15180-PD 1..173 1..186 867 93 Plus
glob3-PA 196 CG14675-PA 18..164 35..184 227 36 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23233-PA 192 GI23233-PA 23..184 34..201 245 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24032-PA 209 GL24032-PA 27..174 34..184 260 39.1 Plus
Dper\GL24031-PA 107 GL24031-PA 2..62 126..186 195 63.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26482-PB 218 GA26482-PB 19..173 32..186 582 67.7 Plus
Dpse\GA26483-PA 209 GA26483-PA 27..174 34..184 259 39.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10544-PA 209 GM10544-PA 1..173 1..186 849 86 Plus
Dsec\GM10846-PA 196 GM10846-PA 18..164 35..184 242 36.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19540-PA 209 GD19540-PA 1..173 1..186 853 86.6 Plus
Dsim\GD19828-PA 196 GD19828-PA 18..164 35..184 244 36.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22893-PA 208 GJ22893-PA 29..176 34..184 277 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24567-PA 218 GK24567-PA 19..174 31..186 509 57.7 Plus
Dwil\GK17234-PA 215 GK17234-PA 23..176 33..183 250 35.3 Plus
Dwil\GK14442-PA 206 GK14442-PA 21..182 33..192 187 30.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24095-PA 209 GE24095-PA 1..203 1..218 810 72.5 Plus
Dyak\GE10172-PA 225 GE10172-PA 17..164 34..184 233 35.8 Plus