Clone MIP34848 Report

Search the DGRC for MIP34848

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:348
Well:48
Vector:pOTB7
Associated Gene/Transcriptsmp-30-RC
Protein status:MIP34848.pep: gold
Sequenced Size:1118

Clone Sequence Records

MIP34848.complete Sequence

1118 bp assembled on 2012-03-19

GenBank Submission: BT133323.1

> MIP34848.complete
AAAAAAAACAAGAGAGCCCGCATGGAAATGCCACAAGTTGAATAATATGG
TATATAAAACAACTAGAGGGGTGTGCTTTCAACCGAGTCAAGACCGTGCA
TAATCAATTCGAAATGAATGACACAAATGTCATACAAGGTTGAAGCTGTT
CCCGATTCCTACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCG
CCAGAGTCTGTACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATG
ATTTCAAGCAGAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTT
GCATCGTTCATTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGG
ATGCGGTCTTCGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGG
CCAAGGTCACTCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAAC
CGCCTTAATGATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCAC
CATGGCCGACAGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACA
GCTGGCAGGCCGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATA
TCCAATGGCCTGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGA
CACCAACAACCACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCG
CCGTAAGCAACCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAA
GGACCATTGTTCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTA
CGTGGCCACCTTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCG
GTAAAATTCTGCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTG
GCTTTTGGAGGTCCCAATTTGGATATTTTGTATGTGACAACCGCCAACAA
GTTCGACCAGCCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCA
ATGCCAAGGGTTACGCCGGCGTTAATTTGAAGATCTAGATTATAGACTAC
TTGTATAATAGCATTTAATTAAATAATCAAACATTTACTTGTATACTGAA
CTAAAAAAAAAAAAAAAA

MIP34848.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10571162..10571880 845..127 3550 99.6 Minus
chr3R 27901430 chr3R 10570847..10571105 1102..844 1235 98.5 Minus
chr3R 27901430 chr3R 10575867..10575992 126..1 615 99.2 Minus
chrX 22417052 chrX 11907064..11907783 123..842 450 70.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14746407..14747125 845..127 3595 100 Minus
3R 32079331 3R 14746090..14746350 1104..844 1305 100 Minus
3R 32079331 3R 14751121..14751246 126..1 630 100 Minus
X 23542271 X 12015999..12016718 123..842 480 71.1 Plus
Blast to na_te.dros performed on 2019-03-15 13:04:22 has no hits.

MIP34848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:05:31 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10570847..10571103 846..1102 98 <- Minus
chr3R 10571162..10571880 127..845 99 <- Minus
chr3R 10575867..10575992 1..126 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-03-19 10:40:19 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RB 1..912 127..1038 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:56:44 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RC 1..921 118..1038 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:20:43 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RC 1..921 118..1038 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-19 10:40:18 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RB 49..1024 127..1102 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:56:44 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RC 1..1102 1..1102 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:20:43 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
smp-30-RC 1..1102 1..1102 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:31 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14746092..14746348 846..1102 100 <- Minus
3R 14746407..14747125 127..845 100 <- Minus
3R 14751121..14751246 1..126 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:31 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14746092..14746348 846..1102 100 <- Minus
3R 14746407..14747125 127..845 100 <- Minus
3R 14751121..14751246 1..126 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:31 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14746092..14746348 846..1102 100 <- Minus
3R 14746407..14747125 127..845 100 <- Minus
3R 14751121..14751246 1..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:56:44 Download gff for MIP34848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10571814..10572070 846..1102 100 <- Minus
arm_3R 10572129..10572847 127..845 100 <- Minus
arm_3R 10576843..10576968 1..126 100   Minus

MIP34848.pep Sequence

Translation from 117 to 1037

> MIP34848.pep
MTQMSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNK
VYRAKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRT
LFEVQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGG
QPNAIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPK
VIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLE
IKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYA
GVNLKI*

MIP34848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18129-PA 305 GF18129-PA 2..305 4..306 1284 78 Plus
Dana\GF18130-PA 577 GF18130-PA 273..577 3..306 1267 76.4 Plus
Dana\GF19376-PA 303 GF19376-PA 1..303 4..306 1167 71 Plus
Dana\GF18130-PA 577 GF18130-PA 1..275 4..292 1005 65.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21077-PA 303 GG21077-PA 1..303 4..306 1515 93.4 Plus
Dere\GG17702-PA 318 GG17702-PA 16..318 4..306 1170 71.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24165-PA 421 GH24165-PA 119..421 4..306 1145 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
smp-30-PC 306 CG7390-PC 1..306 1..306 1614 100 Plus
smp-30-PD 303 CG7390-PD 1..303 4..306 1599 100 Plus
smp-30-PB 303 CG7390-PB 1..303 4..306 1599 100 Plus
smp-30-PA 303 CG7390-PA 1..303 4..306 1599 100 Plus
regucalcin-PB 303 CG1803-PB 1..303 4..306 1173 71.9 Plus
regucalcin-PC 303 CG1803-PC 1..303 4..306 1173 71.9 Plus
regucalcin-PA 303 CG1803-PA 1..303 4..306 1173 71.9 Plus
regucalcin-PD 319 CG1803-PD 17..319 4..306 1173 71.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21765-PA 334 GI21765-PA 31..334 3..306 1175 71.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23668-PA 303 GL23668-PA 1..303 4..306 1347 82.2 Plus
Dper\GL20270-PA 287 GL20270-PA 23..286 4..305 886 58.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26692-PA 303 GA26692-PA 1..303 4..306 1347 82.2 Plus
Dpse\GA14770-PA 325 GA14770-PA 23..324 4..305 1169 71.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25827-PA 303 GM25827-PA 1..303 4..306 1522 94.7 Plus
Dsec\GM13249-PA 315 GM13249-PA 22..315 13..306 1134 71.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20401-PA 303 GD20401-PA 1..302 1..302 1525 94.4 Plus
Dsim\GD17058-PA 348 GD17058-PA 46..348 4..306 1173 71.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18538-PA 303 GJ18538-PA 1..303 4..306 1164 71 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11687-PA 601 GK11687-PA 1..300 4..303 1228 78 Plus
Dwil\GK10081-PA 303 GK10081-PA 1..303 4..306 1167 69.6 Plus
Dwil\GK11687-PA 601 GK11687-PA 299..601 4..306 1138 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\smp-30-PA 757 GE26429-PA 454..757 3..306 1548 92.8 Plus
Dyak\regucalcin-PA 318 GE16489-PA 16..318 4..306 1165 70.6 Plus

MIP34848.hyp Sequence

Translation from 117 to 1037

> MIP34848.hyp
MTQMSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNK
VYRAKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRT
LFEVQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGG
QPNAIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPK
VIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLE
IKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYA
GVNLKI*

MIP34848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
smp-30-PC 306 CG7390-PC 1..306 1..306 1614 100 Plus
smp-30-PD 303 CG7390-PD 1..303 4..306 1599 100 Plus
smp-30-PB 303 CG7390-PB 1..303 4..306 1599 100 Plus
smp-30-PA 303 CG7390-PA 1..303 4..306 1599 100 Plus
regucalcin-PB 303 CG1803-PB 1..303 4..306 1173 71.9 Plus