MXO01001.5prime Sequence
225 bp (225 high quality bases) assembled on 2006-12-21
> MXO01001.5prime
CAGTCGACATGATTATTCCAATCCGTTGTTTCACCTGCGGCAAGGTCATT
GGCAACAAGTGGGAGTCGTATTTGGGTCTCCTGCAAGCGGAATACACCGA
AGGAGATGCCCTGGATGCTTTGGGTCTAAAGAGGTACTGCTGCCGTCGCA
TGCTCCTGGGCCACGTGGATCTTATCGAAAAACTGCTCAACTATGCTCCT
CTGGAGAAGGCAAGCTTTCTAGACC
MXO01001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13628-PA | 204 | Rpb10-RA | 1..201 | 9..209 | 1005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb10-RA | 405 | CG13628-RA | 108..308 | 9..209 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24717795..24717901 | 103..209 | 535 | 100 | Plus |
3R | 32079331 | 3R | 24717618..24717712 | 9..103 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:09:45 has no hits.
MXO01001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:08 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb10-PA | 1..204 | 9..212 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:28 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13628-PA | 1..204 | 9..212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:30 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13628-RA | 65..269 | 9..213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:11 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb10-RA | 108..312 | 9..213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:39 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb10-RA | 108..312 | 9..213 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:39 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24717618..24717712 | 9..103 | 100 | -> | Plus |
3R | 24717796..24717905 | 104..213 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:11 Download gff for
MXO01001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20543340..20543434 | 9..103 | 100 | -> | Plus |
arm_3R | 20543518..20543627 | 104..213 | 98 | | Plus |