Clone MXO01003 Report

Search the DGRC for MXO01003

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:3
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptmRpL55-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01003.5prime Sequence

345 bp (345 high quality bases) assembled on 2006-12-21

> MXO01003.5prime
CAGTCGACATGTTGCTGAAACAGTTGCCCCAGGCTGTTCAGCAGATACGC
TGCATCTCATCGGCCACGACGGCGGTTACCAGGCTGCATCGCTCGGTTTA
CTGCCGGCTATATCCCACAGTTGTGGTGCAACCCGATGGATCCACGATAA
ACATCCGCTATCACGAGCCCAGGAAGATTATCAAGCTTCCCTTGGATCTG
AGCACCTTAACCGATGCGGAGCGCAGAGCGAGATTGGAGGCCCGCAAGCC
GCGCAAGAAGGTCAAGATCATGGAGGAGGTGGAGGACAACTTCAACGCCA
AGAAGTACATGAAGTACATCAAAAAGAAGGCAAGCTTTCTAGACC

MXO01003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14283-PA 324 mRpL55-RA 1..321 9..329 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL55-RA 456 CG14283-RA 88..408 9..329 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19094642..19094818 185..9 885 100 Minus
3R 32079331 3R 19094442..19094587 329..184 730 100 Minus
Blast to na_te.dros performed 2014-11-28 22:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1159..1206 281..328 105 68.8 Plus

MXO01003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:12 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14283-PA 1..324 9..330 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:29 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14283-PA 1..324 9..330 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:34 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14283-RA 72..404 1..335 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:39 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL55-RA 77..409 1..335 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:36 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL55-RA 80..412 1..335 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:36 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19094438..19094585 186..335 98 <- Minus
3R 19094642..19094826 1..185 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:39 Download gff for MXO01003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14920160..14920307 186..335 98 <- Minus
arm_3R 14920364..14920548 1..185 97   Minus