MXO01004.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-12-21
> MXO01004.5prime
CAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCAGCAAAAAT
AGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTACAAAGAAAA
AAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAAGACCAAGA
AATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGAAGCAAAAC
GATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATATCTACGCT
TAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCATCGAATCA
TCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACAATGACGCA
AGCTTTCTAGACC
MXO01004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-PA | 342 | CG6272-RA | 1..339 | 9..347 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6272-RB | 614 | CG6272-RB | 77..415 | 9..347 | 1695 | 100 | Plus |
CG6272-RA | 543 | CG6272-RA | 77..415 | 9..347 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11097645..11097874 | 347..118 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 11097999..11098110 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:07:49 has no hits.
MXO01004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:14 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:29 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-PA | 1..342 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:36 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..418 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:43 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..418 | 9..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:29 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6272-RA | 77..418 | 9..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:29 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11097642..11097872 | 120..351 | 99 | <- | Minus |
3L | 11098000..11098110 | 9..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:43 Download gff for
MXO01004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11090742..11090972 | 120..351 | 99 | <- | Minus |
arm_3L | 11091100..11091210 | 9..119 | 100 | | Minus |