Clone MXO01005 Report

Search the DGRC for MXO01005

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:5
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptlolal-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01005.5prime Sequence

405 bp (405 high quality bases) assembled on 2006-12-21

> MXO01005.5prime
CAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAATGGAACGAT
TTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGACGAGAAGAG
CTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAAAGCCCACA
AAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTACTGGAGGAG
AACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCCTACATTCA
CCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAACGTGTCCC
AGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCAAAGTGAAA
GGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTGCAAGCTTTCT
AGACC

MXO01005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5738-PB 384 lolal-RB 1..381 9..389 1905 100 Plus
CG5738-PA 384 lolal-RA 1..381 9..389 1905 100 Plus
CG5738-PC 384 lolal-RC 1..381 9..389 1905 100 Plus
CG5738-PD 384 lolal-RD 1..381 9..389 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
lolal-RH 958 CG5738-RH 271..652 8..389 1910 100 Plus
lolal-RG 1005 CG5738-RG 318..699 8..389 1910 100 Plus
lolal-RF 1384 CG5738-RF 284..665 8..389 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18155151..18155344 389..196 970 100 Minus
2R 25286936 2R 18155890..18155994 112..8 525 100 Minus
2R 25286936 2R 18155404..18155491 198..111 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:03:53 has no hits.

MXO01005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:16 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-PB 1..384 9..392 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:30 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5738-PD 1..384 9..392 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:39 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5738-RD 301..688 1..389 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:43 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RE 380..767 1..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:39 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
lolal-RF 278..665 1..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:39 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18155405..18155491 111..197 100 <- Minus
2R 18155892..18156000 1..110 96   Minus
2R 18155151..18155342 198..389 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:43 Download gff for MXO01005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14042656..14042847 198..389 100 <- Minus
arm_2R 14042910..14042996 111..197 100 <- Minus
arm_2R 14043397..14043505 1..110 96   Minus