MXO01005.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-12-21
> MXO01005.5prime
CAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAATGGAACGAT
TTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGACGAGAAGAG
CTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAAAGCCCACA
AAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTACTGGAGGAG
AACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCCTACATTCA
CCTACAGGCTATACTGGAGTTCATGTACGCCGGTGAGGTGAACGTGTCCC
AGGAACAATTGCCAGCATTTCTTAAGACCGCCGATCGCCTCAAAGTGAAA
GGCCTCGCAGAGACACCCAGTTCGATAAAGCGGGAAGGTGCAAGCTTTCT
AGACC
MXO01005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5738-PB | 384 | lolal-RB | 1..381 | 9..389 | 1905 | 100 | Plus |
CG5738-PA | 384 | lolal-RA | 1..381 | 9..389 | 1905 | 100 | Plus |
CG5738-PC | 384 | lolal-RC | 1..381 | 9..389 | 1905 | 100 | Plus |
CG5738-PD | 384 | lolal-RD | 1..381 | 9..389 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lolal-RH | 958 | CG5738-RH | 271..652 | 8..389 | 1910 | 100 | Plus |
lolal-RG | 1005 | CG5738-RG | 318..699 | 8..389 | 1910 | 100 | Plus |
lolal-RF | 1384 | CG5738-RF | 284..665 | 8..389 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18155151..18155344 | 389..196 | 970 | 100 | Minus |
2R | 25286936 | 2R | 18155890..18155994 | 112..8 | 525 | 100 | Minus |
2R | 25286936 | 2R | 18155404..18155491 | 198..111 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:53 has no hits.
MXO01005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:16 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-PB | 1..384 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:30 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5738-PD | 1..384 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:39 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5738-RD | 301..688 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:43 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RE | 380..767 | 1..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:39 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lolal-RF | 278..665 | 1..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:39 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18155405..18155491 | 111..197 | 100 | <- | Minus |
2R | 18155892..18156000 | 1..110 | 96 | | Minus |
2R | 18155151..18155342 | 198..389 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:43 Download gff for
MXO01005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14042656..14042847 | 198..389 | 100 | <- | Minus |
arm_2R | 14042910..14042996 | 111..197 | 100 | <- | Minus |
arm_2R | 14043397..14043505 | 1..110 | 96 | | Minus |