Clone MXO01006 Report

Search the DGRC for MXO01006

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:6
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG2611-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01006.5prime Sequence

420 bp (420 high quality bases) assembled on 2006-12-21

> MXO01006.5prime
CAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCCTAAATGGA
GGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATCAAGGTGGT
GGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTGGACGGAAC
CGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCATTCTTTTG
CTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTAAACTGGGT
GACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTTGGGTATCA
TCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACGTGCTCTTC
TGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATACGAAGACT
CGGCGCAAGCTTTCTAGACC

MXO01006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-PA 399 CG2611-RA 1..396 9..404 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 634 CG2611-RA 63..458 9..404 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20650251..20650462 9..220 1060 100 Plus
2L 23513712 2L 20650537..20650722 219..404 930 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:10 has no hits.

MXO01006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:17 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 9..407 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:30 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-PA 1..399 9..407 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:41 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 53..457 1..408 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:07 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..462 1..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:23 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..462 1..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:23 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20650246..20650460 1..218 98 -> Plus
2L 20650537..20650729 219..409 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:07 Download gff for MXO01006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20650246..20650460 1..218 98 -> Plus
arm_2L 20650537..20650729 219..409 98 -> Plus