Clone MXO01007 Report

Search the DGRC for MXO01007

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:7
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTaf13-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01007.5prime Sequence

432 bp (432 high quality bases) assembled on 2006-12-21

> MXO01007.5prime
CAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCGAGGGCGGT
GATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTGGCTACCAA
CTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCATGATGTTCG
GATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATCTGTTGGAA
GACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCAATGGAGAT
CGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCTGGTGCGCA
AAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCATGAACGAG
GAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTATGTGGGCAC
CGAAGGCAAGCTCAAAGCAAGCTTTCTAGACC

MXO01007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10756-PA 411 Taf13-RA 1..408 9..416 2015 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 628 CG10756-RA 82..489 9..416 2025 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20093317..20093660 397..54 1705 99.7 Minus
2L 23513712 2L 20093724..20093768 53..9 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:52:33 has no hits.

MXO01007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:19 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-PA 1..411 9..419 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:30 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10756-PA 1..411 9..419 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:43 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10756-RA 72..493 1..422 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:40 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 75..496 1..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:24 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 75..496 1..422 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:24 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20093318..20093660 54..396 99 <- Minus
2L 20093724..20093774 1..53 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:40 Download gff for MXO01007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20093318..20093660 54..396 99 <- Minus
arm_2L 20093724..20093774 1..53 92   Minus