Clone MXO01010 Report

Search the DGRC for MXO01010

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:10
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRYBP-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01010.5prime Sequence

474 bp (474 high quality bases) assembled on 2006-12-21

> MXO01010.5prime
CAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAAAGCGGCAG
GCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGCACATATAG
AAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCGGAAAGGAA
CCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCCAGCAGGCC
GCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAGTCCGCCTC
CGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAAGCGGTATC
CGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGCGAGAGGTG
ACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCCAAGCCGGT
GAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAGCAACGACA
GCCGGAGTGCAAGCTTTCTAGACC

MXO01010.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12190-PA 453 CG12190-RA 1..450 9..458 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-RB 2242 CG12190-RB 521..970 9..458 2250 100 Plus
RYBP-RA 2064 CG12190-RA 343..792 9..458 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22671628..22671940 146..458 1565 100 Plus
2R 25286936 2R 22671107..22671246 9..148 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:46:56 has no hits.

MXO01010.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:24 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 9..459 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:32 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 9..459 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:49 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-RA 351..805 3..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:00 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 356..810 3..458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:03 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 338..792 3..458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:03 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22671102..22671245 3..147 97 -> Plus
2R 22671630..22671940 148..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:00 Download gff for MXO01010.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18558607..18558750 3..147 97 -> Plus
arm_2R 18559135..18559445 148..458 100   Plus