Clone MXO01011 Report

Search the DGRC for MXO01011

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:11
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptgrh-RM
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01011.5prime Sequence

489 bp (489 high quality bases) assembled on 2006-12-21

> MXO01011.5prime
CAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGCTTTACCAT
CCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTCGCCAAGCC
GCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTTCTACGGCC
ATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCCTGCTCCAC
GGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCATTTTCCGCC
CGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAACATGTTGA
CCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCGGCAGGATG
ACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAGGAGAACGA
GGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGATCGGCCTGC
TAAATGCGGATTACTGCGAAAATGCAAGCTTTCTAGACC

MXO01011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5058-PF 468 grh-RF 1..465 9..473 2325 100 Plus
CG5058-PC 3909 grh-RC 3268..3717 9..458 2250 100 Plus
CG5058-PB 3099 grh-RB 2458..2907 9..458 2250 100 Plus
CG5058-PD 4002 grh-RD 3488..3810 136..458 1615 100 Plus
CG5058-PG 2190 grh-RG 1676..1998 136..458 1615 100 Plus
CG5058-PA 3192 grh-RA 2678..3000 136..458 1615 100 Plus
CG5058-PD 4002 grh-RD 3268..3396 9..137 645 100 Plus
CG5058-PG 2190 grh-RG 1456..1584 9..137 645 100 Plus
CG5058-PA 3192 grh-RA 2458..2586 9..137 645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
grh-RO 3094 CG42311-RO 1799..2248 9..458 2250 100 Plus
grh-RL 6692 CG42311-RL 4105..4554 9..458 2250 100 Plus
grh-RH 3972 CG42311-RH 3295..3744 9..458 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17839594..17839790 263..459 985 100 Plus
2R 25286936 2R 17839093..17839221 9..137 645 100 Plus
2R 25286936 2R 17839313..17839439 136..262 635 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:04 has no hits.

MXO01011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:25 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-PF 1..468 9..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:32 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5058-PF 1..468 9..476 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:51 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5058-RF 447..911 9..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:06 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3295..3741 9..455 100 -> Plus
grh-RH 3808..3824 456..473 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:20 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
grh-RH 3808..3824 456..473 94   Plus
grh-RH 3295..3741 9..455 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:20 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17839315..17839439 138..262 100 -> Plus
2R 17839594..17839789 263..458 100 -> Plus
2R 17839093..17839221 9..137 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:06 Download gff for MXO01011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13726598..13726726 9..137 100 -> Plus
arm_2R 13726820..13726944 138..262 100 -> Plus
arm_2R 13727099..13727294 263..458 100 -> Plus