MXO01011.5prime Sequence
489 bp (489 high quality bases) assembled on 2006-12-21
> MXO01011.5prime
CAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGCTTTACCAT
CCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTCGCCAAGCC
GCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTTCTACGGCC
ATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCCTGCTCCAC
GGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCATTTTCCGCC
CGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAACATGTTGA
CCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCGGCAGGATG
ACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAGGAGAACGA
GGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGATCGGCCTGC
TAAATGCGGATTACTGCGAAAATGCAAGCTTTCTAGACC
MXO01011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5058-PF | 468 | grh-RF | 1..465 | 9..473 | 2325 | 100 | Plus |
CG5058-PC | 3909 | grh-RC | 3268..3717 | 9..458 | 2250 | 100 | Plus |
CG5058-PB | 3099 | grh-RB | 2458..2907 | 9..458 | 2250 | 100 | Plus |
CG5058-PD | 4002 | grh-RD | 3488..3810 | 136..458 | 1615 | 100 | Plus |
CG5058-PG | 2190 | grh-RG | 1676..1998 | 136..458 | 1615 | 100 | Plus |
CG5058-PA | 3192 | grh-RA | 2678..3000 | 136..458 | 1615 | 100 | Plus |
CG5058-PD | 4002 | grh-RD | 3268..3396 | 9..137 | 645 | 100 | Plus |
CG5058-PG | 2190 | grh-RG | 1456..1584 | 9..137 | 645 | 100 | Plus |
CG5058-PA | 3192 | grh-RA | 2458..2586 | 9..137 | 645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 3094 | CG42311-RO | 1799..2248 | 9..458 | 2250 | 100 | Plus |
grh-RL | 6692 | CG42311-RL | 4105..4554 | 9..458 | 2250 | 100 | Plus |
grh-RH | 3972 | CG42311-RH | 3295..3744 | 9..458 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17839594..17839790 | 263..459 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17839093..17839221 | 9..137 | 645 | 100 | Plus |
2R | 25286936 | 2R | 17839313..17839439 | 136..262 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:04 has no hits.
MXO01011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:25 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-PF | 1..468 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:32 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5058-PF | 1..468 | 9..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:51 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5058-RF | 447..911 | 9..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:06 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 9..455 | 100 | -> | Plus |
grh-RH | 3808..3824 | 456..473 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:20 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3808..3824 | 456..473 | 94 | | Plus |
grh-RH | 3295..3741 | 9..455 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:20 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17839315..17839439 | 138..262 | 100 | -> | Plus |
2R | 17839594..17839789 | 263..458 | 100 | -> | Plus |
2R | 17839093..17839221 | 9..137 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:06 Download gff for
MXO01011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13726598..13726726 | 9..137 | 100 | -> | Plus |
arm_2R | 13726820..13726944 | 138..262 | 100 | -> | Plus |
arm_2R | 13727099..13727294 | 263..458 | 100 | -> | Plus |