Clone MXO01013 Report

Search the DGRC for MXO01013

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:13
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTaf10-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01013.5prime Sequence

528 bp (348 high quality bases) assembled on 2010-12-10

> MXO01013.5prime
CAGTCGACATGGCTTCCGATGGCGAGGACGTCAGTGTTACACCCGCAGAA
TCCGTAACATCGGGCACGGACACCGAGGAGGAGGATATAGACTCGCCACT
AATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGTGGAGGAGG
TTCCTCTGACCACGGAGGAATCGGAGATGGATGAGCTGATAAAGCAGCTG
GAGGACTACTCCCCCACCATACCAGACGCCCTCACCATGCACATCTTGAA
AACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCTCGTCTCGG
TGTCCGCGCATAAGTTCATCTCGGATGTTGCCAACGACGCACTGCAGCAC
TGCAGAGACGCGCACCACGAACATCCGGCATTCCAGCGGACACAGTTCCA
GCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGCCATGGAG
GACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCAAGCCGCA
ATATTTCGTTGCAAGCTTTCTAGACCAT

MXO01013.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 13:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 664 CG2859-RA 92..592 9..510 2365 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 13:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2767981..2768227 9..255 1175 98.4 Plus
2L 23513712 2L 2768285..2768540 254..510 1175 98.1 Plus
Blast to na_te.dros performed 2015-01-29 13:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 4126..4175 89..138 106 68 Plus

MXO01013.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:44:34 Download gff for MXO01013.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 80..587 9..519 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:00 Download gff for MXO01013.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..599 9..519 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-29 14:13:08 Download gff for MXO01013.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..599 9..519 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-29 14:13:08 Download gff for MXO01013.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2767981..2768226 9..254 98 -> Plus
2L 2768286..2768547 255..519 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:00 Download gff for MXO01013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2767981..2768226 9..254 98 -> Plus
arm_2L 2768286..2768547 255..519 96   Plus