MXO01015.5prime Sequence
591 bp (591 high quality bases) assembled on 2006-12-21
> MXO01015.5prime
CAGTCGACATGATGGGCACTATGTCGCTGCGCCAGCCAGAGAATTGGCTA
TACGAGATTTGGCAGAAGGGCTACGACAGCCCCTGCTATGTGATGGTGCC
TAATGCAAAAGATCTGGTCAAGTCGCATCTCATGATAGCGGTGCGCGAGG
AGGTGGAAGTGCTAAAAGAGCGCATCTCCGAGCTGATGGACAAGATCAAC
AAGCTGGAGCTCGAGAACAGCATTCTCAAGTCGAACATCCCGCAGGAGAC
ACTGCAGCAGCTGCAGTTGCAGCTACAACTCGCCGCACCGCCGGCCACGC
CCGCCATTCAAGCGGCACCGGCGGTACAAAGTGTCGTTGCTCCAGCTGCC
GCGGGTCAGGCAGTTCAGCAGCAGGCCGCTGGAGCGGTAGCGGTAACGGG
TGTGGCCACCAGTCCAGCGTCCGCGGTGGTACCCACGAGCATTCCCAACG
GCAGCGCCGAGAACGGCAGCAGTGCAGTCGAGTCAGCAGCGGTATCGGTG
GAGCAGCAGGTGCAGCAGGTGACATCAGCAGCGGCAGCAGCAGCATCGGT
AGTCACAGCCAATGGTCCCATGTCCGCAAGCTTTCTAGACC
MXO01015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5461-PC | 570 | bun-RC | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG5461-PD | 681 | bun-RD | 214..678 | 111..575 | 2325 | 100 | Plus |
| CG5461-PE | 765 | bun-RE | 298..762 | 111..575 | 2325 | 100 | Plus |
| CG5461-PF | 3294 | bun-RF | 2827..3291 | 111..575 | 2325 | 100 | Plus |
| CG5461-PA | 3621 | bun-RA | 3154..3618 | 111..575 | 2325 | 100 | Plus |
| CG5461-PB | 660 | bun-RB | 193..657 | 111..575 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bun-RP | 5139 | CG42281-RP | 3391..3957 | 9..575 | 2835 | 100 | Plus |
| bun-RC | 1754 | CG5461-RC | 567..1133 | 9..575 | 2835 | 100 | Plus |
| bun-RO | 3490 | CG42281-RO | 807..1271 | 111..575 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12457759..12458223 | 575..111 | 2325 | 100 | Minus |
| 2L | 23513712 | 2L | 12460588..12460690 | 111..9 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:10:57 has no hits.
MXO01015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:30 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-PC | 1..570 | 9..579 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:33 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5461-PC | 1..570 | 9..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:26:58 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5461-RC | 540..1117 | 2..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:08 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-RC | 559..1136 | 2..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:26 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bun-RC | 559..1136 | 2..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:26 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12457755..12458223 | 111..579 | 99 | <- | Minus |
| 2L | 12460589..12460698 | 2..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:08 Download gff for
MXO01015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12460589..12460698 | 2..110 | 96 | | Minus |
| arm_2L | 12457755..12458223 | 111..579 | 99 | <- | Minus |
