MXO01016.5prime Sequence
603 bp (603 high quality bases) assembled on 2006-12-21
> MXO01016.5prime
CAGTCGACATGGGCCGCAAAAAAATTCAAATATCACGCATCACCGATGAA
CGCAATCGGCAGGTGACCTTCAACAAGCGCAAGTTCGGCGTGATGAAGAA
GGCCTACGAGCTGTCCGTGCTCTGCGACTGCGAGATCGCCCTGATCATCT
TCTCGTCGAGCAACAAGCTGTACCAGTACGCCAGCACCGACATGGATCGC
GTCCTGCTCAAGTACACCGAGTACAACGAGCCCCACGAGTCCCTCACCAA
CAAGAACATCATCGAGAAGGAGAACAAGAACGGCGTGATGTCGCCGGACT
CGCCCGAAGCCGAAACGGACTACACACTCACTCCGCGAACGGAGGCCAAG
TACAACAAGATCGACGAGGAGTTCCAGAACATGATGCAGCGCAACCAGAT
GGCCATCGGCGGTGCGGGTGCCCCTCGCCAGCTTCCAAACAGCAGCTACA
CGCTGCCCGTTTCTGTTCCGGTGCCGGGATCTTACGGCGACAACCTGCTG
CAGGCCAGTCCACAGATGTCCCACACCAACATCAGCCCCCGTCCATCGAG
TTCGGAGACGGATTCAGGTGGGATGTCCCTGATAAGTGCAAGCTTTCTAG
ACC
MXO01016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1429-PE | 582 | Mef2-RE | 1..579 | 9..587 | 2895 | 100 | Plus |
| CG1429-PD | 1623 | Mef2-RD | 1..577 | 9..585 | 2885 | 100 | Plus |
| CG1429-PC | 1548 | Mef2-RC | 1..577 | 9..585 | 2885 | 100 | Plus |
| CG1429-PB | 1530 | Mef2-RB | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG1429-PF | 1506 | Mef2-RF | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG1429-PA | 1551 | Mef2-RA | 1..559 | 9..567 | 2795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mef2-RG | 5240 | CG1429-RG | 2460..3037 | 8..585 | 2890 | 100 | Plus |
| Mef2-RC | 5854 | CG1429-RC | 1056..1633 | 8..585 | 2890 | 100 | Plus |
| Mef2-RD | 3690 | CG1429-RD | 1439..2016 | 8..585 | 2890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9919427..9919749 | 587..265 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 9920519..9920725 | 266..60 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 9921606..9921664 | 66..8 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:32 has no hits.
MXO01016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:32 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mef2-PE | 1..582 | 9..588 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:33 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1429-PE | 1..582 | 9..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:00 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1429-RE | 1018..1604 | 1..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:42 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mef2-RD | 1432..2016 | 1..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:54 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mef2-RD | 1432..2016 | 1..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:54 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9919427..9919747 | 267..587 | 100 | <- | Minus |
| 2R | 9920519..9920722 | 63..266 | 100 | <- | Minus |
| 2R | 9921610..9921671 | 1..62 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:42 Download gff for
MXO01016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5806932..5807252 | 267..587 | 100 | <- | Minus |
| arm_2R | 5808024..5808227 | 63..266 | 100 | <- | Minus |
| arm_2R | 5809115..5809176 | 1..62 | 95 | | Minus |
