MXO01017.5prime Sequence
609 bp (609 high quality bases) assembled on 2006-12-21
> MXO01017.5prime
CAGTCGACATGGTTCTGGAAATGGAGATGTCCAAGACCTATCAGTACCGC
AAGGTGATGAAGCCCATGCTGGAGCGTAAGCGCCGTGCCAGGATTAACAA
GTGCCTGGACGAGCTCAAGGACATCATGGTGGAGTGCCTGACCCAGGAGG
GCGAGCACATCACCCGGCTGGAGAAGGCCGACATCCTGGAGCTGACCGTG
GAGCACATGAAGAAGCTGCGTGCCCAGAAGCAGCTGCGTCTGTCCAGCGT
CACCGGTGGAGTGTCTCCGAGTGCCGATCCCAAGCTTAGCATCGCTGAGA
GTTTCCGTGCTGGCTACGTTCATGCTGCCAATGAAGTGTCCAAAACCTTG
GCCGCTGTACCCGGAGTGAGTGTGGATCTCGGCACCCAGCTGATGAGTCA
CCTTGGCCATCGTCTCAACTACCTGCAAGTGGTGGTTCCCTCGCTGCCCA
TTGGAGTGCCTCTTCAAGCTCCAGTAGAGGATCAAGCTATGGTCACTCCA
CCTCCCTCGGAATGCGACAGCTTGGAGAGCGGAGCCTGCAGCCCGGCGCC
CAGCGAGGCCAGCTCCACCTCTGGCCCCATGTGGCGTCCCTGGGCAAGCT
TTCTAGACC
MXO01017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14548-PA | 588 | HLHmbeta-RA | 1..585 | 9..593 | 2925 | 100 | Plus |
| CG8361-PA | 561 | HLHm7-RA | 16..113 | 24..121 | 340 | 93.8 | Plus |
| CG8333-PA | 618 | HLHmgamma-RA | 22..119 | 24..121 | 340 | 93.8 | Plus |
| CG8346-PA | 675 | HLHm3-RA | 7..107 | 21..121 | 255 | 90 | Plus |
| CG8346-PA | 675 | HLHm3-RA | 130..196 | 144..210 | 210 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 131..715 | 9..593 | 2925 | 100 | Plus |
| E(spl)m3-HLH-RA | 1305 | CG8346-RA | 204..397 | 21..214 | 640 | 88.7 | Plus |
| E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..289 | 24..199 | 460 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26005309..26005893 | 593..9 | 2925 | 100 | Minus |
| 3R | 32079331 | 3R | 26022026..26022219 | 21..214 | 640 | 88.7 | Plus |
| 3R | 32079331 | 3R | 25999964..26000139 | 24..199 | 460 | 84.1 | Plus |
| 3R | 32079331 | 3R | 26037178..26037291 | 24..137 | 405 | 90.4 | Plus |
| 3R | 32079331 | 3R | 26040357..26040416 | 51..110 | 180 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 2455..2521 | 72..140 | 106 | 65.7 | Plus |
MXO01017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:33 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14548-PA | 1..588 | 9..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:34 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14548-PA | 1..588 | 9..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:02 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14548-RA | 124..724 | 1..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:45 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mbeta-HLH-RA | 124..724 | 1..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:58 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)mbeta-HLH-RA | 124..724 | 1..600 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:58 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26005300..26005900 | 1..600 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:45 Download gff for
MXO01017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21831022..21831622 | 1..600 | 98 | | Minus |
