MXO01018.5prime Sequence
609 bp (609 high quality bases) assembled on 2006-12-21
> MXO01018.5prime
CAGTCGACATGCAGCATCCACATCCCATTGACCAGCCCACCTACATGCCG
GATGTTCCATTCCAGCCGCTTTGGGGTCAGGAGGCTCCACCGCCGCCCAT
TGTTCCATACCAAGAGCTCATCGCCGGTTTTCCCTGCACCGACTTGTCTC
TGTGGCAGCGCTCGCAAGTAACTCCTTTGGTGCCCCAGCGTCCGTCGACA
AATGGGAGGGCCAACGGCTCCTCCAGCTCCTCGAAGAAAACGCGTCGCCG
TGTGGCATCAATGGCCCAACGGAGAGCTGCAAATATCCGCGAACGCCGTC
GCATGTTTAACCTAAACGAGGCCTTCGACAAGTTGCGCCGCAAGGTGCCC
ACCTTCGCCTACGAGAAACGACTGTCCCGCATCGAAACCCTTCGCTTGGC
CATCACCTACATCGGATTCATGGCTGAGCTGCTGAGCGGCACGCCCTCGA
ACTCCCACAAATCGCGGTCCGACGTCTATGGGAGTATGAATGGTCACCAT
CAGGCGCCACCACCGGCAATTCATCCACATCATCTGCATCCGGCGGCGGC
ATATCAACGCGATTTCGCTTCGCCCTATAATCATAGTTTGTCCGCAAGCT
TTCTAGACC
MXO01018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6913-PA | 588 | Fer3-RA | 1..585 | 9..593 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3-RA | 836 | CG6913-RA | 85..670 | 8..593 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11693576..11694021 | 593..148 | 2230 | 100 | Minus |
| 3R | 32079331 | 3R | 11694088..11694227 | 147..8 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:33 has no hits.
MXO01018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:35 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-PA | 1..588 | 9..594 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:34 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-PA | 1..588 | 9..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:04 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6913-RA | 47..636 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:32 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:45 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3-RA | 81..670 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:45 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11694088..11694231 | 1..147 | 97 | | Minus |
| 3R | 11693576..11694021 | 148..593 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:32 Download gff for
MXO01018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7519810..7519953 | 1..147 | 97 | | Minus |
| arm_3R | 7519298..7519743 | 148..593 | 100 | <- | Minus |
