MXO01019.5prime Sequence
612 bp (612 high quality bases) assembled on 2006-12-21
> MXO01019.5prime
CAGTCGACATGTCGGATCTCTTTACCACTTTCGATAGCAACGGCGTCGCC
GAGCACCACCTGCACCACAACCACAACTCCACATCGTCCGCCAGCGGACT
GCTCCACGACCCACCCATGGCCTCGCCCTCCCAGCACAGTCCGATGACCA
ACAACAGCAACTCATCCTCGCAGAACGGCGGACCGGTTTCCGGTTTGGGT
ACGGGAACGGGCCCCATATCTGGTGGTAGCAAGTCATCCAATCACACATC
ATCCGCCGCCGGTTCCGAGAACACTCCCATGCTTACCAAACCGCGTCTCA
CAGAGCTCGTCCGAGAGGTGGATACCACCACGCAGCTGGACGAGGATGTT
GAGGAGCTTCTGCTTCAGATCATCGACGACTTTGTCGAGGACACCGTCAA
GTCGACGAGCGCCTTCGCCAAGCACCGAAAGTCTAACAAGATCGAGGTGC
GCGACGTGCAGCTGCACTTTGAGCGGAAGTACAACATGTGGATACCCGGC
TTCGGTACGGACGAACTGCGTCCCTACAAGCGGGCAGCTGTCACGGAGGC
GCACAAACAGCGCCTTGCCCTCATACGGAAAACGATCAAGAAATACGCAA
GCTTTCTAGACC
MXO01019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17358-PB | 591 | Taf12-RB | 1..588 | 9..596 | 2940 | 100 | Plus |
| CG17358-PC | 591 | Taf12-RC | 1..588 | 9..596 | 2940 | 100 | Plus |
| CG17358-PA | 591 | Taf12-RA | 1..588 | 9..596 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf12-RA | 1234 | CG17358-RA | 478..1065 | 9..596 | 2940 | 100 | Plus |
| Taf12-RB | 1066 | CG17358-RB | 310..897 | 9..596 | 2940 | 100 | Plus |
| Taf12-RE | 897 | CG17358-RE | 170..728 | 38..596 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11678555..11678872 | 596..279 | 1590 | 100 | Minus |
| 3R | 32079331 | 3R | 11678944..11679213 | 278..9 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:33 has no hits.
MXO01019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:37 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-PA | 1..591 | 9..597 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:34 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17358-PA | 1..591 | 9..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:06 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17358-RA | 421..1013 | 1..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:15 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 305..897 | 1..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:44 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf12-RB | 305..897 | 1..596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:44 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11678555..11678872 | 279..596 | 100 | <- | Minus |
| 3R | 11678944..11679217 | 1..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:15 Download gff for
MXO01019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7504277..7504594 | 279..596 | 100 | <- | Minus |
| arm_3R | 7504666..7504939 | 1..278 | 98 | | Minus |
