MXO01020.5prime Sequence
621 bp (621 high quality bases) assembled on 2006-12-21
> MXO01020.5prime
CAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTGCCTCCGGA
ATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCCACGCACCG
CGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAAACTGAAGG
ACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGCTGGAGATC
ATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAGCTGGAGAC
GCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGACGGCGGTGA
ACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGGATGCCGAG
GCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTGAATGCCGA
GCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCTTACCGATC
GCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGCAGCATCAG
CAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCACAGCAGCA
ACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGACAGCAGAC
AGTCGGCAAGCTTTCTAGACC
MXO01020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1007-PA | 600 | emc-RA | 1..597 | 9..605 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| emc-RA | 2049 | CG1007-RA | 265..861 | 9..605 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 749664..750227 | 9..572 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:04 has no hits.
MXO01020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:38 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 9..609 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:35 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-PA | 1..600 | 9..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:08 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1007-RA | 255..860 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:21 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:42 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| emc-RA | 261..866 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:42 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 749660..750227 | 1..572 | 99 | -> | Plus |
| 3L | 752272..752309 | 573..611 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:21 Download gff for
MXO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 749660..750227 | 1..572 | 99 | -> | Plus |
| arm_3L | 752272..752309 | 573..611 | 94 | | Plus |
