MXO01021.5prime Sequence
663 bp (663 high quality bases) assembled on 2006-12-21
> MXO01021.5prime
CAGTCGACATGATGAACGAGGCGGCACTTGCCAATATGATACCCTACGAC
ACCATCGGATTGTATGAACAGCCAAAGCCGCGCTTCATCTTCAAGATGCC
TCGTGTGGTCCCGGACCAGAAGTCCAAGTTCGAGAGCGACGAACTTTTCC
GGAGGCTCAGTCGGGAGAGCGAGGTTCGGTACACGGGCTATCGGGAACGA
AGCATCGAGGAGCGGCAGGTGCGCTTCATGAACGGATGTCGCGAAGGACA
CACGGAGGCCAGCTTCGTGGCATCGGGCACCAATCTGCAGCTGGTGTTCA
ACGCCAACCAGAACCCGTACCTGCACGACAAGGAGTGCGACTTTGACAAG
GAGCACGGCAAGGTGCACATCAAGTCCTACTTTATCATGAACGGGGTTTG
TGTCCGGTTCCGTGGATGGATAGACCTGGAACGACTGGACGGAGTTGGCT
GTCTGGAGTATGACGAGCGGCGCGCCATGCACGAGGACGCCATTCTGCGG
GATCAGATCGATCGCTACAACCAGCGACTGCGTGAGTTCGAGGACACTAA
GCGCGCCTACCGTGACAATCGACAGGACGAGATGGAGGCAGTGCGACGGG
GCGTGGCCTCCGGAGGCATTGGCGTTGGCGCCAGCATGTGGCGTCGTGCA
AGCTTTCTAGACC
MXO01021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7959-PA | 642 | Bgb-RA | 1..639 | 9..647 | 3195 | 100 | Plus |
| CG7960-PA | 642 | Bro-RA | 97..155 | 84..142 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bgb-RB | 1242 | CG7959-RB | 285..923 | 9..647 | 3195 | 100 | Plus |
| Bgb-RA | 1242 | CG7959-RA | 285..923 | 9..647 | 3195 | 100 | Plus |
| Bro-RA | 744 | CG7960-RA | 110..575 | 61..526 | 470 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1639995..1640633 | 9..647 | 3195 | 100 | Plus |
| 3L | 28110227 | 3L | 1647978..1648443 | 61..526 | 425 | 72.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3766..3819 | 57..4 | 108 | 66.7 | Minus |
MXO01021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:40 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bgb-PA | 1..642 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:35 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7959-PA | 1..642 | 9..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:10 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7959-RA | 286..937 | 1..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:09 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bgb-RA | 277..928 | 1..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:10 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bgb-RA | 277..928 | 1..655 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:10 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1639987..1640638 | 1..655 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:09 Download gff for
MXO01021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1639987..1640638 | 1..655 | 98 | | Plus |
