MXO01023.5prime Sequence
690 bp (690 high quality bases) assembled on 2006-12-21
> MXO01023.5prime
CAGTCGACATGGAGCGGCGCGTGAAGCTGAAGACGATCAATCCGCACATA
ACGTGCAAGATCTGCGGCGGCTACTTCATCGATGCCACCACGGTGACGGA
GTGTCTGCACACATTTTGCAAGAGTTGCCTGGTGAAGCACCTGGAGGAGA
AGAAGACCTGCCCCACCTGCGACAACATCATCCATCAGTCCCATCCCCTG
CAATACATCAGCTTCGATCGCACCATGCAGGACATTGTGTACAAACTGGT
GCCGAAACTGCAAGAAGATGAATCGCGCCGAGAGCGGGACTTCTACAAGA
GCAGGAACATGCCGTGTCCCAAGGATATCACGCAGAACCACGAGGACGAC
AACGAGAAGGTGATGGACGCCCACGCCGAGTCCGACTTCCATCGCCTGGA
CGAGCAGGTGAACGTGTGCCTGGAGTGCATTAGCAATAACTTCAAGAACC
TGCAGAGGCGATTCATTCGCTGCAGCTCGCAGGCGACGATAACGCATCTC
AAGAAGCTGGTGGCCAAGAAGATCCTCAACGGCATCGAAAAGTACAGAGA
GATCGACATACTGTGCAACGAGGAGCTGCTCGGCAAGGATCACACGCTGA
AGTTCGTCTACGTGACGCGCTGGCGCTTCCGGGATCCGCCGCTTCGGCTG
CAGTTTCGTCCGCGGGTCGAGCTCGCAAGCTTTCTAGACC
MXO01023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4195-PA | 669 | l(3)73Ah-RA | 1..666 | 9..674 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)73Ah-RA | 1404 | CG4195-RA | 377..1043 | 8..674 | 3335 | 100 | Plus |
| l(3)73Ah-RB | 1322 | CG4195-RB | 295..961 | 8..674 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16589245..16589530 | 266..551 | 1430 | 100 | Plus |
| 3L | 28110227 | 3L | 16589016..16589172 | 111..267 | 770 | 99.4 | Plus |
| 3L | 28110227 | 3L | 16589647..16589771 | 550..674 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 16588851..16588957 | 8..114 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 8763..8803 | 406..366 | 115 | 75.6 | Minus |
MXO01023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:43 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4195-PA | 1..669 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:36 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4195-PA | 1..669 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:14 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4195-RA | 932..1604 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:59 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)73Ah-RB | 292..964 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:36 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)73Ah-RB | 292..964 | 1..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:36 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16588848..16588957 | 1..114 | 96 | -> | Plus |
| 3L | 16589020..16589172 | 115..267 | 100 | -> | Plus |
| 3L | 16589247..16589530 | 268..551 | 100 | -> | Plus |
| 3L | 16589649..16589774 | 552..678 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:59 Download gff for
MXO01023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16581948..16582057 | 1..114 | 96 | -> | Plus |
| arm_3L | 16582120..16582272 | 115..267 | 100 | -> | Plus |
| arm_3L | 16582347..16582630 | 268..551 | 100 | -> | Plus |
| arm_3L | 16582749..16582874 | 552..678 | 98 | | Plus |
