MXO01024.5prime Sequence
696 bp (430 high quality bases) assembled on 2006-12-21
> MXO01024.5prime
CAGTCGACATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAAGGGACAGG
GATAATGTGGCTGCGACCAGCAATGCTGCCGCCAATCCGCACGCAGCCCT
GCAGCCGCAACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGCACAACATG
AGATACGATTGCAGAATATCGTGGCCACCTTCTCGGTGAACTGTGAACTG
GACCTCAAGGCAATCAACTCGCGTACGAGGAACTCGGAGTACTCGCCCAA
GCGCTTTCGTGGCGTCATCATGCGAATGCACTCGCCCAGGTGCACAGCGC
TAATCTTTCGAACGGGCAAGGTCATCTGCACGGGTGCACGAAACGAGATT
GAGGCGGACATTGGATCGCGAAAGTTCGCACGCATCCTGCAGAAGCTGGG
ATTCCCCGTAAAGTTCATGGAATACAAGCTGCATAATATTGTGGCCACCG
TTGATCTGCGCTTCCCCATCCGCCTGGAGAACCTCAACCACGTGCACGGG
CAGTTTAGTTCCTACGAACCGGAGATGTTTCCAGGCCTAATCTATCGCAT
GGTCAAGCCGCGCATCGTTCTCCTGATCTTCGTCAACGGAAAGGTTGTAT
TTACGGGCGCCAAGTCGCGCAAGGACATTATGGACTGCCTGGAGGCGATA
TCACCTATTTTACTAAGTTTTCGCAAGACGGCAAGCTTTCTAGACC
MXO01024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7562-PA | 675 | Trf-RA | 1..672 | 9..680 | 3335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 983 | CG7562-RA | 77..748 | 9..680 | 3345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8073197..8073713 | 164..680 | 2570 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8072971..8073126 | 9..164 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:16 has no hits.
MXO01024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:45 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-PA | 1..675 | 9..681 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:37 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7562-PA | 1..675 | 9..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:16 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7562-RA | 70..751 | 1..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:12 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 72..753 | 1..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:02 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 72..753 | 1..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:02 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072966..8073125 | 1..163 | 97 | -> | Plus |
| 2L | 8073197..8073718 | 164..688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:12 Download gff for
MXO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072966..8073125 | 1..163 | 97 | -> | Plus |
| arm_2L | 8073197..8073718 | 164..688 | 99 | | Plus |
