MXO01025.5prime Sequence
696 bp (696 high quality bases) assembled on 2006-12-21
> MXO01025.5prime
CAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACCGCAAGGTG
ATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAACAAGTGTCT
GGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGAGGGCGAGC
ACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCGTGGATCAC
ATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGAGTAGTGGC
TGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGTGGAGTCCT
TTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGGTCCTGCTG
CAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAATTCCTATC
GACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCAGCAGCAAC
AGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCCGCCTAGCC
TTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCCGCCATTAG
TTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGTGACATCCG
TCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGCAGGAGTCC
GGCGCCTCTGAGCCCGTCTGGAGGCCCTGGGCAAGCTTTCTAGACC
MXO01025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8346-PA | 675 | HLHm3-RA | 1..672 | 9..680 | 3360 | 100 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 13..113 | 15..115 | 255 | 90 | Plus |
CG8361-PA | 561 | HLHm7-RA | 31..121 | 33..123 | 255 | 91.2 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 136..202 | 138..204 | 210 | 92.5 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 22..62 | 18..58 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..869 | 8..680 | 3365 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 15..208 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 18..184 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022691 | 8..680 | 3365 | 100 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 208..15 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 18..184 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 18..131 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 21..193 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:21 has no hits.
MXO01025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:46 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-PA | 1..675 | 9..684 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:37 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-PA | 1..675 | 9..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:19 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-RA | 297..982 | 1..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:16 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 1..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..874 | 1..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:16 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022011..26022690 | 1..679 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:16 Download gff for
MXO01025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847733..21848412 | 1..679 | 99 | -> | Plus |