Clone MXO01025 Report

Search the DGRC for MXO01025

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:25
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHLHm3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01025.5prime Sequence

696 bp (696 high quality bases) assembled on 2006-12-21

> MXO01025.5prime
CAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACCGCAAGGTG
ATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAACAAGTGTCT
GGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGAGGGCGAGC
ACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCGTGGATCAC
ATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGAGTAGTGGC
TGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGTGGAGTCCT
TTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGGTCCTGCTG
CAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAATTCCTATC
GACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCAGCAGCAAC
AGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCCGCCTAGCC
TTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCCGCCATTAG
TTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGTGACATCCG
TCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGCAGGAGTCC
GGCGCCTCTGAGCCCGTCTGGAGGCCCTGGGCAAGCTTTCTAGACC

MXO01025.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8346-PA 675 HLHm3-RA 1..672 9..680 3360 100 Plus
CG14548-PA 588 HLHmbeta-RA 13..113 15..115 255 90 Plus
CG8361-PA 561 HLHm7-RA 31..121 33..123 255 91.2 Plus
CG14548-PA 588 HLHmbeta-RA 136..202 138..204 210 92.5 Plus
CG8333-PA 618 HLHmgamma-RA 22..62 18..58 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-RA 1305 CG8346-RA 197..869 8..680 3365 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 143..336 15..208 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..280 18..184 430 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26022019..26022691 8..680 3365 100 Plus
3R 32079331 3R 26005688..26005881 208..15 640 88.7 Minus
3R 32079331 3R 25999964..26000130 18..184 430 83.8 Plus
3R 32079331 3R 26037178..26037291 18..131 375 88.6 Plus
3R 32079331 3R 25997756..25997928 21..193 235 75.7 Plus
Blast to na_te.dros performed on 2014-11-28 19:47:21 has no hits.

MXO01025.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:46 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm3-PA 1..675 9..684 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:37 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8346-PA 1..675 9..684 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:19 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8346-RA 297..982 1..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:16 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..874 1..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..874 1..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:16 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26022011..26022690 1..679 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:16 Download gff for MXO01025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21847733..21848412 1..679 99 -> Plus