MXO01026.5prime Sequence
720 bp (720 high quality bases) assembled on 2006-12-21
> MXO01026.5prime
CAGTCGACATGGATCCCTCAAATCTTGCTTTTGGTTTTCCCGGTCTCCCC
AACCACGGACACATGCCAATACCTCCTACAGCCAATATGCTTGGTGGCCA
GCATCCAGCACCCACCGCCAGCCCACCACAAAGCGTCCCCGGCCGTCGGA
CGCCACTTGGATCGGTTGGTCTGGGTGGTTTCTATGCCCAGGGAATGGGC
ATGTCCCAGCAGCCACCGACGGATGAGAACAAACCAGGGCCCAGTGCTCC
GGAGAAGCCATTGAGTCCCACGGCCGCCGCCATCGCAGCCATTGCCATCA
GTGGTGGCACCACCACGGTGGCCGTGTCCAGTGGTGGCGCCAGCGGAAGT
GGCTCCAACAGTGGCAAGCAGAAAAACCGCCAGGGAAAGACGGTAAGGCT
GAACATAAATGCCCGGGAACGACGAAGGATGCACGATTTGAATGATGCCC
TTGATGAGCTGAGAAGTGTGATTCCCTATGCCCATTCGCCTTCTGTGCGA
AAGCTGTCGAAAATAGCCACCTTGCTGCTGGCTAAGAACTACATTCTGAT
GCAGCAAAATGCTCTCGAGGAGTTGAGAAGACTTTTGGCCTATATACAAA
GCACCACGGGAGCAGCGCCACTGGATTTGGGTGCATTTCCGGCGGCTGCC
AAGTTGCAGGCTCTTCTTCAAGGACCTCACAACGAACCACCGACTAGCAG
CAGTGCAAGCTTTCTAGACC
MXO01026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5545-PA | 699 | Oli-RA | 1..696 | 9..704 | 3455 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oli-RC | 1068 | CG5545-RC | 101..796 | 9..704 | 3465 | 99.9 | Plus |
| Oli-RB | 1174 | CG5545-RB | 207..902 | 9..704 | 3465 | 99.9 | Plus |
| Oli-RD | 1392 | CG5545-RD | 425..1120 | 9..704 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17590240..17590811 | 9..580 | 2845 | 99.8 | Plus |
| 2L | 23513712 | 2L | 17590870..17590995 | 579..704 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:08:28 has no hits.
MXO01026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:48 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-PA | 1..699 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:37 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5545-PA | 1..699 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:21 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5545-RA | 734..1432 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:08 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-RA | 839..1537 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:48 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oli-RD | 425..1123 | 9..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:48 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17590240..17590811 | 9..580 | 99 | -> | Plus |
| 2L | 17590872..17590998 | 581..708 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:08 Download gff for
MXO01026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17590240..17590811 | 9..580 | 99 | -> | Plus |
| arm_2L | 17590872..17590998 | 581..708 | 98 | | Plus |
