MXO01027.5prime Sequence
726 bp (726 high quality bases) assembled on 2006-12-21
> MXO01027.5prime
CAGTCGACATGGTAGCACCAGCAAACACAATCCAAACTAATGCGAATTCC
GACGACGATGAGGGAGTGCGGTCGGCGCCTACCTCCATGCTGGTGCTGGA
CGCCAAGCGGAAGAGCGCCTTCTTGCCGTACCGCCCCCAGTCCACCGTGC
TGACCAACTTGCAGCGCGGCAATACGGAGGCCACCTTTTGCCCCGTCGAA
GTTTCGCTCTCCTTTCACGAACGCGCTGGCCAAGGCGAGATCACGGAGGA
GCAGGTGGCAGCGGAAAGAGCGCGTCAGCAGAACATTGATTACAAGGATG
CACATGGTTTCACAGCCTTACATTGGGCAGCCTCCTACGGTCAACTGGTT
TCCGTGCAGCTCCTCGTCGCGGCTGGTGCCAATGTGAACACTATGGCTCC
AGATTTGATTAGTCCTCTACTCCTAGCTGCCGCCGGTGGGCATAACGAGA
TCGTCCGCTTCTTGCTGGAACACGGCGCTGATTCGGGCCACATGGACATC
GTTGGAAACACGGCGCTTATGTACGCAGCGGCCGGCAATCATCCGCATAC
TTGCAACGAGCTCCTGGCCAAAGACCTGGATCTAAGTGCCACCAACGAGG
ACGGAGACACGGCCTACTCGCTGGCCGTAGAGCATGGGGCTCATCTGGCG
CAGGCGCTACTGGAGCAGTACATGACGGCCATAATCACAGCGGGAGCCTT
CGGTAGTATTGCAAGCTTTCTAGACC
MXO01027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5846-PA | 705 | CG5846-RA | 1..702 | 9..710 | 3485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5846-RB | 952 | CG5846-RB | 171..872 | 9..710 | 3495 | 99.9 | Plus |
| CG5846-RA | 845 | CG5846-RA | 27..728 | 9..710 | 3495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9956292..9956993 | 710..9 | 3495 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:47 has no hits.
MXO01027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:50 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5846-PA | 1..705 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:38 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5846-PA | 1..705 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:23 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5846-RA | 815..1521 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:36 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5846-RA | 27..733 | 9..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:31 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5846-RA | 27..733 | 9..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:31 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9956287..9956993 | 9..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:36 Download gff for
MXO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9956287..9956993 | 9..718 | 99 | | Minus |
