MXO01028.5prime Sequence
771 bp (771 high quality bases) assembled on 2006-12-21
> MXO01028.5prime
CAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGCGCCTTTCC
TGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACCGTCATGGA
CTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTGCAACAACG
AGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACAACATGATC
GGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTGTATGTAAT
CCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGATTGCCGATT
ACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTGCCAACGTC
ATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCCGCCTTCGA
GGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTACACGTGGG
ACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAGATAAGAAG
GACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTCCAGAAGCA
GCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCCCCCACCAA
TACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGGGCGATGAT
CTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACAGGACCGCT
AGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGAAAAGAAGA
GCAAGGCAAGCTTTCTAGACC
MXO01028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9473-PB | 750 | MED6-RB | 1..747 | 9..755 | 3735 | 100 | Plus |
| CG9473-PA | 750 | MED6-RA | 1..747 | 9..755 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED6-RE | 1617 | CG9473-RE | 458..1204 | 9..755 | 3735 | 100 | Plus |
| MED6-RD | 1814 | CG9473-RD | 655..1401 | 9..755 | 3735 | 100 | Plus |
| MED6-RC | 1770 | CG9473-RC | 611..1357 | 9..755 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9766444..9766727 | 755..472 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 9767177..9767358 | 190..9 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 9766948..9767122 | 365..191 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 9766788..9766893 | 471..366 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:47 has no hits.
MXO01028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:51 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-PA | 1..750 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:38 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9473-PA | 1..750 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:25 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9473-RA | 628..1382 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:22 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-RC | 603..1357 | 1..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:52 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED6-RC | 603..1357 | 1..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:52 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9766444..9766727 | 472..755 | 100 | <- | Minus |
| 3R | 9766788..9766893 | 366..471 | 100 | <- | Minus |
| 3R | 9766948..9767122 | 191..365 | 100 | <- | Minus |
| 3R | 9767177..9767366 | 1..190 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:22 Download gff for
MXO01028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5592166..5592449 | 472..755 | 100 | <- | Minus |
| arm_3R | 5592510..5592615 | 366..471 | 100 | <- | Minus |
| arm_3R | 5592670..5592844 | 191..365 | 100 | <- | Minus |
| arm_3R | 5592899..5593088 | 1..190 | 98 | | Minus |
