MXO01030.5prime Sequence
783 bp (783 high quality bases) assembled on 2006-12-21
> MXO01030.5prime
CAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGTTTGATCTC
AATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGACAGGTCGCA
CTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAAACAAATCG
CCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCTGGAAGAGT
CTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAATCGCGCTG
GCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCGCCAGTATC
GAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCGCCAACCAG
GTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACCGTCGTGGA
TATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGCCCAGGCAC
TGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGCTGGCCACT
GCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCGCTCAAGCG
AGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACACCATCAAGA
TTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACCAGTCGTTC
GGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGACAAAAGGC
AGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCAGCTTCTGG
CACAGCACAACAAGTACGCAAGCTTTCTAGACC
MXO01030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15845-PA | 762 | Adf1-RA | 1..759 | 9..767 | 3795 | 100 | Plus |
| CG15845-PB | 762 | Adf1-RB | 1..759 | 9..767 | 3795 | 100 | Plus |
| CG15845-PC | 789 | Adf1-RC | 28..786 | 9..767 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adf1-RE | 1668 | CG15845-RE | 199..957 | 9..767 | 3795 | 100 | Plus |
| Adf1-RC | 1675 | CG15845-RC | 206..964 | 9..767 | 3795 | 100 | Plus |
| Adf1-RB | 1795 | CG15845-RB | 326..1084 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6667072..6667374 | 465..767 | 1515 | 100 | Plus |
| 2R | 25286936 | 2R | 6666719..6667013 | 171..465 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 6662595..6662757 | 9..171 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:37 has no hits.
MXO01030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:54 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-PB | 1..762 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:39 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15845-PC | 21..789 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:30 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15845-RC | 200..973 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:10 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:03 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adf1-RB | 319..1092 | 1..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:03 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6666720..6667013 | 172..465 | 100 | -> | Plus |
| 2R | 6662588..6662757 | 1..171 | 98 | -> | Plus |
| 2R | 6667073..6667382 | 466..777 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:10 Download gff for
MXO01030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2550093..2550262 | 1..171 | 98 | -> | Plus |
| arm_2R | 2554225..2554518 | 172..465 | 100 | -> | Plus |
| arm_2R | 2554578..2554887 | 466..777 | 98 | | Plus |
