MXO01031.5prime Sequence
786 bp (786 high quality bases) assembled on 2006-12-21
> MXO01031.5prime
CAGTCGACATGAGCGATAATAACAACGCGTTGGCCACCAAGGAAGACGTT
TTCGGCATGGAGCACGACCAGGACCACACCAGCAAGCACTACTCGCGGTG
CAGCAGTGCGGGCAGCACGCACACTCCGAACTCCTCGGCGCACAATTCAG
ACGACGACGACGATAGCGGCGATGCGCGCCATTCCGCGGCCGCCAATTCC
ACGCTGAGTTACAAGGAGCGGAGAAGGGAGGCGCACACCCAGGCGGAGCA
GAAGCGGCGCGATGCCATCAAGAAGGGCTACGACAGTCTGCAGGAGCTGG
TGCCGCGCTGCCAGCCCAACGACTCCTCCGGCTACAAGCTCAGCAAGGCT
CTGATCCTGCAGAAGTCCATCGAATACATTGGCTACCTTAACCAGCAGAA
ACTCAAGCAGGAGGACGAGGGATCGGCGCTACAGAAGGAGGTAACAGCGT
TACGGATCATTAAGAACGGCTATGAGAACATGCTACAGCATCAGCAGGCG
AATCCAGGGCCGGAGGAGGCACGCCTCACCGATGAGGCCAAGTTTCAAGT
GTTCCAGGCAATTATGGAGGAAATGTTCGAGACATTTCAACACATACCCA
TGGAGAACTTTAAGCAGCTGACCACCGGCATTATCCCCTGGCTGGAGGAG
CACTGCAAGCCGCACATCCTGCGCAACATACTCAGTCGTACCTTGCAGCA
AATGGCGCAGGAGGCTATGGAAAAACAGGAACTTCAGGCCATGGAGCAGG
AGTCGAGCGAGGGTTTCAGCGCAAGCTTTCTAGACC
MXO01031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3350-PA | 765 | bigmax-RA | 1..762 | 9..770 | 3710 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bigmax-RA | 954 | CG3350-RA | 49..819 | 1..770 | 3755 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27287785..27288188 | 551..148 | 1975 | 99.3 | Minus |
| 3R | 32079331 | 3R | 27287501..27287720 | 770..551 | 1085 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27288328..27288469 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:17 has no hits.
MXO01031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:56 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3350-PA | 1..765 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:39 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3350-PA | 1..765 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:32 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3350-RA | 18..788 | 1..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:10 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bigmax-RA | 49..819 | 1..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:26 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bigmax-RA | 49..819 | 1..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:26 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27287501..27287719 | 552..770 | 99 | <- | Minus |
| 3R | 27287785..27288185 | 151..551 | 99 | <- | Minus |
| 3R | 27288328..27288478 | 1..150 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:10 Download gff for
MXO01031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23113223..23113441 | 552..770 | 99 | <- | Minus |
| arm_3R | 23113507..23113907 | 151..551 | 99 | <- | Minus |
| arm_3R | 23114050..23114200 | 1..150 | 98 | | Minus |
