MXO01033.5prime Sequence
795 bp (795 high quality bases) assembled on 2006-12-21
> MXO01033.5prime
CAGTCGACATGATCTACACCACAACACTGATGTCCTCGCGCGGCGGCCTC
ATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCCAGCATCAG
CAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTTGGGCCTGC
CGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCATGCGGGAG
CAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACCGTCGAGGT
GGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCAGCTGAAGG
AGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACGTGGAGGAG
CGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCCGAGATCAA
GCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCAGCTGCGCA
AGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGGCCTTCCTG
CGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGACAAGCAAAC
CTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCGCCTTTCCG
ACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGATGGAGCTC
TACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGCCTGGGCCA
CATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGAGCCAAAGC
CCCGCAAGACGCTGGCCTCCAAAGATATAGCAAGCTTTCTAGACC
MXO01033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4217-PA | 774 | TFAM-RA | 1..771 | 9..779 | 3855 | 100 | Plus |
CG4217-PB | 855 | TFAM-RB | 148..852 | 75..779 | 3525 | 100 | Plus |
CG4217-PB | 855 | TFAM-RB | 1..70 | 9..78 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TFAM-RA | 1055 | CG4217-RA | 137..908 | 8..779 | 3860 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 285..989 | 75..779 | 3525 | 100 | Plus |
TFAM-RB | 1242 | CG4217-RB | 137..207 | 8..78 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20576145..20576726 | 656..75 | 2910 | 100 | Minus |
3R | 32079331 | 3R | 20575498..20575623 | 779..654 | 630 | 100 | Minus |
3R | 32079331 | 3R | 20576804..20576874 | 78..8 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:46 has no hits.
MXO01033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:23:59 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-PA | 1..774 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:40 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4217-PA | 1..774 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:36 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4217-RA | 137..922 | 1..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:50 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 128..913 | 1..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:01 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TFAM-RA | 128..913 | 1..787 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:01 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20575493..20575621 | 656..787 | 96 | <- | Minus |
3R | 20576146..20576724 | 77..655 | 100 | <- | Minus |
3R | 20576806..20576883 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:50 Download gff for
MXO01033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16401215..16401343 | 656..787 | 96 | <- | Minus |
arm_3R | 16401868..16402446 | 77..655 | 100 | <- | Minus |
arm_3R | 16402528..16402605 | 1..76 | 94 | | Minus |