MXO01034.5prime Sequence
795 bp (795 high quality bases) assembled on 2006-12-21
> MXO01034.5prime
CAGTCGACATGATGATGATGGAGGCGGCAGCCGCGGCAGCAGCGGCGGCA
TTGCAACAGCAGCAGCAACAGCAATCACCACTCCATTCGCCGGCGAATGA
AGTTGCGATTCCCACAGAACAGCCAGCGGCAACAGTGGCAACAGGAGCCG
CTGCTGCAGCAGCCGCAGCAGCAACACCGATTGCAACTGGCAACGTCAAA
AGCGGCAGCACCACCAGCAACGCCAATCACACCAACAGCAACAATAGTCA
CCAGGACGAGGAGGAGCTGGACGATGAGGAGGAGGACGAGGAGGAGGATG
AGGACGAGGATGATGAGGAGGAGAATGCCTCGATGCAATCGAATGCTGAT
GATATGGAGCTGGATGCGCAGCAAGAAACCAGAACTGAGCCAAGTGCAAC
AACACAACAGCAGCATCAGCAGCAGGATACAGAGGATCTTGAGGAGAACA
AGGATGCGGGGGAGGCTAGTTTAAATGTTAGCAATAATCACAATACAACC
GATAGCAATAATAGTTGTAGTCGAAAGAACAACAATGGCGGCAATGAAAG
TGAGCAACATGTGGCCAGTTCGGCGGAGGACGATGATTGCGCCAACAACA
ATACAAATACCAGCAATAACAACAATACCAGCAACACCGCCACCAGCAAC
ACGAACAACAACAATAATAATAACAGCAGCAGCGGCAACAGCGAGAAGCG
CAAGAAGAAGAACAATAACAACAACAACGGCCAGCCTGCTGTTCTATTAG
CTGCCAAAGATAAAGAGGTAAGTTTCAACGCAAGCTTTCTAGACC
MXO01034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11387-PB | 774 | ct-RB | 1..771 | 9..779 | 3855 | 100 | Plus |
| CG11387-PA | 6528 | ct-RA | 565..1323 | 9..767 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ct-RE | 11035 | CG11387-RE | 833..1591 | 9..767 | 3795 | 100 | Plus |
| ct-RD | 10732 | CG11387-RD | 593..1351 | 9..767 | 3795 | 100 | Plus |
| ct-RC | 11062 | CG11387-RC | 923..1681 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7646221..7646991 | 9..779 | 3855 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..3051 | 25..780 | 333 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2967 | 39..731 | 325 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..7035 | 69..421 | 312 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6943 | 24..260 | 298 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6929 | 54..255 | 290 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2910 | 55..731 | 288 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6915 | 116..286 | 281 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2856 | 117..725 | 267 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7002 | 130..424 | 260 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6898 | 118..247 | 255 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2430 | 606..728 | 246 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2867 | 167..771 | 228 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2666 | 361..724 | 217 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6880 | 167..326 | 208 | 61.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1163 | 100..212 | 194 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1173 | 115..201 | 189 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2895 | 125..254 | 178 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6855 | 191..325 | 177 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2663 | 28..180 | 176 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2955 | 115..267 | 173 | 59 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3255..3375 | 124..246 | 168 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1157 | 626..731 | 165 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 210..427 | 163 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7112 | 368..725 | 162 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7142..7200 | 185..243 | 132 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1614 | 93..220 | 122 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6912 | 358..448 | 121 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 368..427 | 121 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1589 | 191..253 | 115 | 68.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8639..8677 | 159..197 | 114 | 76.9 | Plus |
MXO01034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:24:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:40 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11387-PB | 1..774 | 9..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:38 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11387-RB | 583..1362 | 1..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:34 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ct-RC | 917..1681 | 1..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:30 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ct-RC | 917..1681 | 1..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:30 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7646215..7646994 | 1..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:34 Download gff for
MXO01034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7540248..7541027 | 1..783 | 99 | | Plus |
