MXO01035.5prime Sequence
799 bp (779 high quality bases) assembled on 2006-12-21
> MXO01035.5prime
CAGTCGACATGAACCTCGCCGACGTTTGCCGTATTTGCGCCAACAAAATT
ATGNGGCCACCAGCGAGATCGCAACATATTCATTCACATGCGGGGAAAAT
ATTTGGGTCAACTGAAGCTAATCACGGGAGTGGAGCTGACAAGAAACCAG
GGGCTGCCGGAGATTGTTTGCGAGCGCTGCTTCTCCGAGCTGGACCTGGC
CACCAAGTTCCGCGAGCGGTGCATCTTCTCGCAAAAGTACCTGCTGGATA
TCATAAAGAAGACCAGTGATCAAAGCACTGTTCACGTTGAGCTTAGTTCC
GAGCCGCTGGACGAGCAACTGATCGATGCGGATCAATTGGAGACGCACTA
CGATGACGACCAGTACGTTTGTTATCAAGGCACGAAAGAGGAACACCAAG
ACCTAGAGGAAATCGAGCTGGATGACGACCCCTCTGCCGCTGTGATAGCG
GCAGCAGAGGCGGCAGCAGAAGCGGCGCAGCAGGAGGATCTACAGGAGCA
GGAAATGGAGCGGGCCGCCAAGAGGCGCAGTAACTTCTTTATCTGCGACG
AGTGTGGAACCCTGTTCCACGATGCGTTCCTGTACACCGAGCATTTAAAT
GGGCACCAGAACCGGCGGGATATGAACCAGTTCTTCCCCTGCCCTGAGTG
CCCACAGACTTTTAACAAGAAGGCGCTTCTCAAGCAGCATCGCACCCAGG
TTCATTTAATTAACCGCAGGTTCCAGTGCACCATCTGCCACGAGGCTTTC
GCGTCTCTGGGCGCTAAGTTGCGGCACGACAAGGCAAGCTTTCTAGACC
MXO01035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14667-PA | 777 | CG14667-RA | 46..774 | 55..783 | 3645 | 100 | Plus |
| CG14667-PB | 1014 | CG14667-RB | 46..773 | 55..782 | 3640 | 100 | Plus |
| CG14667-PA | 777 | CG14667-RA | 1..45 | 9..53 | 225 | 100 | Plus |
| CG14667-PB | 1014 | CG14667-RB | 1..45 | 9..53 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14667-RB | 1260 | CG14667-RB | 70..842 | 9..782 | 3845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5375276..5375925 | 134..783 | 3250 | 100 | Plus |
| 3R | 32079331 | 3R | 5375091..5375216 | 9..135 | 585 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:16 has no hits.
MXO01035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:03 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-PA | 1..777 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:41 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-PA | 1..777 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:41 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RA | 22..799 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:42 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RA | 22..799 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:22 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14667-RB | 70..845 | 9..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:22 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5375091..5375216 | 9..135 | 99 | -> | Plus |
| 3R | 5375278..5375929 | 136..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:42 Download gff for
MXO01035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1200813..1200938 | 9..135 | 99 | -> | Plus |
| arm_3R | 1201000..1201651 | 136..788 | 99 | | Plus |
