Clone MXO01036 Report

Search the DGRC for MXO01036

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:36
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptOptix-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01036.5prime Sequence

801 bp (801 high quality bases) assembled on 2006-12-21

> MXO01036.5prime
CAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCA
ACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACCCACTCGCC
GGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCACCTCCAACG
GCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACAAGCCGCGG
GATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTGCCGCTGGC
CTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGGGGGCGGGG
CGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTCTGCCACCC
TTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGTTACCTGCA
GAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCATCCAGCCGA
TTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCACTGAACGGC
GCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCTGCCTACAG
TGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCCGCCGAAGC
TGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGGCGGCGGCA
GCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCCACCACGAC
CGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTTCTCCACGT
CGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCTTTCTAGAC
C

MXO01036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 685..1461 9..785 3835 99.7 Plus
CG18455-PB 780 Optix-RB 1..777 9..785 3835 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2136 9..785 3855 99.7 Plus
Optix-RB 1470 CG18455-RB 162..938 9..785 3855 99.7 Plus
Optix-RA 2358 CG18455-RA 1050..1826 9..785 3855 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8041997 9..785 3855 99.7 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:06 has no hits.

MXO01036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:04 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PB 1..780 9..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:41 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PB 1..780 9..788 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:43 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-RB 69..855 1..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:24 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1040..1826 1..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:52 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1040..1826 1..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:52 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041211..8041997 1..785 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:24 Download gff for MXO01036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928716..3929502 1..785 99   Plus