Clone MXO01037 Report

Search the DGRC for MXO01037

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:37
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPdp1-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01037.5prime Sequence

834 bp (834 high quality bases) assembled on 2006-12-21

> MXO01037.5prime
CAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGATCGAAACT
GGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCACTGATCAG
CGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCATCTGCCCAG
ATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGGCGCAAACA
GCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTATGATGCCGA
CCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTCGGAGAACA
ACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCAGTGGCCTG
GGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCTCTTGGTCT
TGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATCCGACTGCA
TCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAACATTTTCG
TTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCCTTCTCCGA
CGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAAGCAATTCG
TTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCCGGAAGAAC
AACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAGGAGAACCA
GATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAACATTACATC
AGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTGCACGTCTA
TCGAAATTCCAAGATGTGGCAAGCTTTCTAGACC

MXO01037.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17888-PB 813 Pdp1-RB 1..810 9..818 4050 100 Plus
CG17888-PA 813 Pdp1-RA 1..810 9..818 4050 100 Plus
CG17888-PG 855 Pdp1-RG 145..852 111..818 3540 100 Plus
CG17888-PE 855 Pdp1-RE 145..852 111..818 3540 100 Plus
CG17888-PF 753 Pdp1-RF 43..750 111..818 3540 100 Plus
CG17888-PD 1944 Pdp1-RD 1234..1941 111..818 3540 100 Plus
CG17888-PH 1062 Pdp1-RH 352..1059 111..818 3540 100 Plus
CG17888-PC 1713 Pdp1-RC 1003..1710 111..818 3540 100 Plus
CG17888-PG 855 Pdp1-RG 1..106 9..114 530 100 Plus
CG17888-PE 855 Pdp1-RE 1..106 9..114 530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-RK 6855 CG17888-RK 1175..1984 9..818 4050 100 Plus
Pdp1-RP 6398 CG17888-RP 1175..1984 9..818 4050 100 Plus
Pdp1-RB 5065 CG17888-RB 2264..3073 9..818 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7816484..7816725 734..493 1210 100 Minus
3L 28110227 3L 7817437..7817662 492..267 1130 100 Minus
3L 28110227 3L 7818069..7818224 266..111 780 100 Minus
3L 28110227 3L 7853182..7853285 112..9 520 100 Minus
3L 28110227 3L 7816329..7816412 818..735 420 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:11:34 has no hits.

MXO01037.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:06 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-PB 1..813 9..822 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:41 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17888-PA 1..813 9..822 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:45 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17888-RA 412..1224 9..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:36 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3076 9..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:32 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3076 9..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:32 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7818069..7818223 112..266 100 <- Minus
3L 7853183..7853285 9..111 100   Minus
3L 7816484..7816725 493..734 100 <- Minus
3L 7816326..7816412 735..822 97 <- Minus
3L 7817437..7817662 267..492 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:36 Download gff for MXO01037.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7809426..7809512 735..822 97 <- Minus
arm_3L 7809584..7809825 493..734 100 <- Minus
arm_3L 7810537..7810762 267..492 100 <- Minus
arm_3L 7811169..7811323 112..266 100 <- Minus
arm_3L 7846283..7846385 9..111 100   Minus