MXO01037.5prime Sequence
834 bp (834 high quality bases) assembled on 2006-12-21
> MXO01037.5prime
CAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGATCGAAACT
GGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCACTGATCAG
CGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCATCTGCCCAG
ATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGGCGCAAACA
GCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTATGATGCCGA
CCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTCGGAGAACA
ACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCAGTGGCCTG
GGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCTCTTGGTCT
TGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATCCGACTGCA
TCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAACATTTTCG
TTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCCTTCTCCGA
CGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAAGCAATTCG
TTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCCGGAAGAAC
AACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAGGAGAACCA
GATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAACATTACATC
AGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTGCACGTCTA
TCGAAATTCCAAGATGTGGCAAGCTTTCTAGACC
MXO01037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17888-PB | 813 | Pdp1-RB | 1..810 | 9..818 | 4050 | 100 | Plus |
CG17888-PA | 813 | Pdp1-RA | 1..810 | 9..818 | 4050 | 100 | Plus |
CG17888-PG | 855 | Pdp1-RG | 145..852 | 111..818 | 3540 | 100 | Plus |
CG17888-PE | 855 | Pdp1-RE | 145..852 | 111..818 | 3540 | 100 | Plus |
CG17888-PF | 753 | Pdp1-RF | 43..750 | 111..818 | 3540 | 100 | Plus |
CG17888-PD | 1944 | Pdp1-RD | 1234..1941 | 111..818 | 3540 | 100 | Plus |
CG17888-PH | 1062 | Pdp1-RH | 352..1059 | 111..818 | 3540 | 100 | Plus |
CG17888-PC | 1713 | Pdp1-RC | 1003..1710 | 111..818 | 3540 | 100 | Plus |
CG17888-PG | 855 | Pdp1-RG | 1..106 | 9..114 | 530 | 100 | Plus |
CG17888-PE | 855 | Pdp1-RE | 1..106 | 9..114 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1984 | 9..818 | 4050 | 100 | Plus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1984 | 9..818 | 4050 | 100 | Plus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3073 | 9..818 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 734..493 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 492..267 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 266..111 | 780 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853285 | 112..9 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7816329..7816412 | 818..735 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:34 has no hits.
MXO01037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:06 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-PB | 1..813 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:41 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-PA | 1..813 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:45 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-RA | 412..1224 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:36 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3076 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:32 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3076 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:32 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7818069..7818223 | 112..266 | 100 | <- | Minus |
3L | 7853183..7853285 | 9..111 | 100 | | Minus |
3L | 7816484..7816725 | 493..734 | 100 | <- | Minus |
3L | 7816326..7816412 | 735..822 | 97 | <- | Minus |
3L | 7817437..7817662 | 267..492 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:36 Download gff for
MXO01037.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809426..7809512 | 735..822 | 97 | <- | Minus |
arm_3L | 7809584..7809825 | 493..734 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 267..492 | 100 | <- | Minus |
arm_3L | 7811169..7811323 | 112..266 | 100 | <- | Minus |
arm_3L | 7846283..7846385 | 9..111 | 100 | | Minus |