MXO01038.5prime Sequence
852 bp (832 high quality bases) assembled on 2006-12-21
> MXO01038.5prime
CAGTCGACATGGTTTTTATCCGAGATCCCTGTGGCATCGCCTGCTTGGTA
GTCACCTACGGAGCAGTTCTGTACGCGGACTATGTGGTCATCCGTTGGAT
CATTCTGACCACCATGCCGGGCAGCCTCTGGATGTCCTTCCATGTGGTGC
TCTTTAACACCGTCGTCTTCCTGTTGGCCATGTCCCACTCCAAGGCCGTG
TTCTCCGATCCAGGCACTGTGCCGCTGCCCGCCAATCGTCTGGACTTCTC
CGACCTGCACACGACCAACAAAAACAATCCTCCGCCCGGTAATGGACACA
GCAGCGAATGGACCGTGTGCACCCGCTGCGAAACGTATAGGCCGCCACGC
GCCCATCATTGTCGCATCTGCAAGCGGTGCATCCGGCGCATGGATCACCA
CTGCCCCTGGATCAACAACTGTGTGGGCGAGCGCAATCAGAAGTACTTCC
TGCAGTTCCTCATCTACGTGGCGCTGCTGTCGCTCTACTCCATTGCCCTT
ATCGTCGGTTCCTGGGTGTGGCCCTGCGAGGAGTGCAGCCAGAACGTGAT
CGAAACCCAGTTGCGAATGATTCACTCGGTTATCCTTATGCTGGTGTCGG
CGCTGTTCGGCCTGTTCGTTACGGCCATCATGGTGGACCAGCTGCATGCG
ATTCTGTACGACGAGACGGCCGTGGAGGCGATACAGCAGAAGGGCACCTA
TCGTCCAAATCGGCGCAAGTACCAGCTGCTGGCGGATGTGTTCGGACGCG
GACATCCGGCGCTGTGGCTGCTGCCCTGCACCAGTCTCAATCATGCCTCC
CGCTACCATGATACGCCTCTACTGAGCCACGAGGTCGCAAGCTTTCTAGA
CC
MXO01038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6627-PA | 831 | Dnz1-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnz1-RA | 1949 | CG6627-RA | 367..1194 | 9..836 | 4140 | 100 | Plus |
| CG8314-RA | 1280 | CG8314-RA | 536..637 | 347..448 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10855654..10856101 | 569..122 | 2240 | 100 | Minus |
| 2L | 23513712 | 2L | 10855190..10855457 | 836..569 | 1340 | 100 | Minus |
| 2L | 23513712 | 2L | 10856163..10856278 | 124..9 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:30 has no hits.
MXO01038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:08 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnz1-PA | 1..831 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:42 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6627-PA | 1..831 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:47 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6627-RA | 382..1219 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:04 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnz1-RA | 357..1194 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:00 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnz1-RA | 357..1194 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:00 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10855190..10855457 | 569..836 | 100 | <- | Minus |
| 2L | 10855655..10856098 | 125..568 | 100 | <- | Minus |
| 2L | 10856163..10856282 | 1..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:04 Download gff for
MXO01038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10855190..10855457 | 569..836 | 100 | <- | Minus |
| arm_2L | 10855655..10856098 | 125..568 | 100 | <- | Minus |
| arm_2L | 10856163..10856282 | 1..124 | 96 | | Minus |
