MXO01039.5prime Sequence
837 bp (792 high quality bases) assembled on 2006-12-21
> MXO01039.5prime
CAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCATCGACAAG
GACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTGAAGGTGCC
CAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACATGGACGTGG
GCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGGTCTCGCTT
TCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAAATACCCAC
CGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCTCGGCGTAT
TCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTACCTCGGCG
GCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATTGTGCAAAA
GCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACTAAAGCTGG
AGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGCCTATCGAC
AAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACACAACATTGA
ATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGACGACAAGA
ATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATCAATACTAT
AACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGCTACCTGAA
GGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCCGCACAAGA
ACATGTGGGAGCTCAAGAAAGAATATCGCCACTACAAGACTGAAGAGAAG
AAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACTCGG
MXO01039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6538-PA | 834 | TfIIFbeta-RA | 1..829 | 9..837 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFbeta-RA | 1118 | CG6538-RA | 106..934 | 9..837 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10767163..10767699 | 545..9 | 2685 | 100 | Minus |
| 3R | 32079331 | 3R | 10766806..10767097 | 837..546 | 1460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:01 has no hits.
MXO01039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:09 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6538-PA | 1..829 | 9..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:42 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6538-PA | 1..829 | 9..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:49 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6538-RA | 240..1076 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:49 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFbeta-RA | 98..934 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:02 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFbeta-RA | 98..934 | 1..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:02 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10766806..10767097 | 546..837 | 100 | <- | Minus |
| 3R | 10767163..10767703 | 1..545 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:49 Download gff for
MXO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6592528..6592819 | 546..837 | 100 | <- | Minus |
| arm_3R | 6592885..6593425 | 1..545 | 99 | | Minus |
