MXO01040.5prime Sequence
443 bp (-37 high quality bases) assembled on 2010-12-10
> MXO01040.5prime
CAATCGACATGGGCATGAGACGCGAAGCTGTTCATCGTGGACGCGTACCA
CCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCATATTGCCAA
CTGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCCTACCTCAGTT
CCTACGTCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCTCGATAT
GGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCTA
ACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATAC
CCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTC
GTCAGGTCAGAGCTCTTCGTCCTAGACGCCAGCCAGTGCTCCATGCCGCT
CCATGTGGCGCCACTGCTGGCCGGCGCCTGACTTCATAGCTCC
MXO01040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 13:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svp-RE | 3859 | CG11502-RE | 1230..1658 | 9..437 | 1980 | 97.4 | Plus |
| svp-RB | 3859 | CG11502-RB | 1230..1658 | 9..437 | 1980 | 97.4 | Plus |
| svp-RA | 3421 | CG11502-RA | 1272..1700 | 9..437 | 1980 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 13:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12294006..12294417 | 26..437 | 1895 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-01-29 13:07:45 has no hits.
MXO01040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:44:35 Download gff for
MXO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RB | 1223..1664 | 1..443 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:09:01 Download gff for
MXO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RA | 1265..1706 | 1..443 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-29 14:13:11 Download gff for
MXO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RA | 1265..1706 | 1..443 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-29 14:13:11 Download gff for
MXO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12294008..12294423 | 28..443 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:09:01 Download gff for
MXO01040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8119730..8120145 | 28..443 | 96 | | Plus |
