MXO01041.5prime Sequence
850 bp (758 high quality bases) assembled on 2006-12-21
> MXO01041.5prime
CAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTACCGTGCTT
TACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTATACCAAAAA
CGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCTGGTGCTCG
AGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCCCCAGCGAA
TGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTCCTTATAAA
GAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGACGATCAGC
GCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGACCTCCGTG
AAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGCTGGAACCA
GATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGGCTCCAACT
ATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCATCCGGCGC
ATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCCAATGACTA
CCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAAGCAGTTCA
AGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGGGTCGCGGT
GAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGTCCCGCCAC
GGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCCGTCGCCGC
CTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTCCAGAGCCG
GCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAGGCCTACTA
MXO01041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17118-PA | 846 | CG17118-RA | 1..842 | 9..850 | 4135 | 99.6 | Plus |
| CG5343-PA | 600 | CG5343-RA | 385..422 | 393..430 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17118-RA | 979 | CG17118-RA | 45..886 | 9..850 | 4165 | 99.6 | Plus |
| Bug22-RA | 943 | CG5343-RA | 585..656 | 389..460 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10730696..10731263 | 283..850 | 2795 | 99.5 | Plus |
| 2L | 23513712 | 2L | 10730440..10730631 | 93..284 | 960 | 100 | Plus |
| 2L | 23513712 | 2L | 10730299..10730382 | 9..92 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 10430207..10430278 | 460..389 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:48 has no hits.
MXO01041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:12 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-PA | 1..841 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:43 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-PA | 1..841 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:52 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..885 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:52 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..885 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:23 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17118-RA | 36..885 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:23 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10730290..10730382 | 1..92 | 96 | -> | Plus |
| 2L | 10730440..10730631 | 93..284 | 100 | -> | Plus |
| 2L | 10730698..10731262 | 285..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:52 Download gff for
MXO01041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10730290..10730382 | 1..92 | 96 | -> | Plus |
| arm_2L | 10730440..10730631 | 93..284 | 100 | -> | Plus |
| arm_2L | 10730698..10731262 | 285..849 | 99 | | Plus |
